Strain Fitness in Agrobacterium fabrum C58 around Atu3897

Experiment: Phage 100.2 + bactiera

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3896 and Atu3897 are separated by 37 nucleotidesAtu3897 and Atu3898 are separated by 107 nucleotides Atu3896: Atu3896 - sugar ABC transporter ATPase, at 991,160 to 992,230 Atu3896 Atu3897: Atu3897 - glycerol-3-phosphate dehydrogenase, at 992,268 to 993,791 Atu3897 Atu3898: Atu3898 - DeoR family transcriptional regulator, at 993,899 to 994,672 Atu3898 Position (kb) 992 993 994Strain fitness (log2 ratio) -3 -2 -1 0 1at 991.278 kb on + strand, within Atu3896at 991.351 kb on + strand, within Atu3896at 991.368 kb on + strand, within Atu3896at 991.368 kb on + strand, within Atu3896at 991.415 kb on + strand, within Atu3896at 991.415 kb on + strand, within Atu3896at 991.423 kb on - strand, within Atu3896at 991.430 kb on - strand, within Atu3896at 991.510 kb on + strand, within Atu3896at 991.515 kb on + strand, within Atu3896at 991.515 kb on + strand, within Atu3896at 991.515 kb on - strand, within Atu3896at 991.556 kb on + strand, within Atu3896at 991.587 kb on + strand, within Atu3896at 991.597 kb on - strand, within Atu3896at 991.787 kb on + strand, within Atu3896at 991.817 kb on - strand, within Atu3896at 991.852 kb on + strand, within Atu3896at 991.860 kb on - strand, within Atu3896at 991.871 kb on + strand, within Atu3896at 991.879 kb on - strand, within Atu3896at 991.888 kb on - strand, within Atu3896at 991.955 kb on - strand, within Atu3896at 992.023 kb on - strand, within Atu3896at 992.030 kb on + strand, within Atu3896at 992.038 kb on + strand, within Atu3896at 992.041 kb on - strand, within Atu3896at 992.102 kb on - strand, within Atu3896at 992.139 kb on + strandat 992.146 kb on + strandat 992.189 kb on - strandat 992.196 kb on + strandat 992.213 kb on - strandat 992.283 kb on - strandat 992.354 kb on + strandat 992.506 kb on - strand, within Atu3897at 992.562 kb on + strand, within Atu3897at 992.569 kb on + strand, within Atu3897at 992.569 kb on + strand, within Atu3897at 992.569 kb on + strand, within Atu3897at 992.577 kb on - strand, within Atu3897at 992.577 kb on - strand, within Atu3897at 992.577 kb on - strand, within Atu3897at 992.577 kb on - strand, within Atu3897at 992.587 kb on - strand, within Atu3897at 992.640 kb on - strand, within Atu3897at 992.640 kb on - strand, within Atu3897at 992.657 kb on + strand, within Atu3897at 992.704 kb on + strand, within Atu3897at 992.712 kb on - strand, within Atu3897at 992.712 kb on - strand, within Atu3897at 992.819 kb on - strand, within Atu3897at 992.828 kb on + strand, within Atu3897at 992.836 kb on - strand, within Atu3897at 992.836 kb on - strand, within Atu3897at 992.922 kb on + strand, within Atu3897at 992.922 kb on + strand, within Atu3897at 992.930 kb on - strand, within Atu3897at 992.930 kb on - strand, within Atu3897at 992.975 kb on + strand, within Atu3897at 992.975 kb on + strand, within Atu3897at 992.975 kb on + strand, within Atu3897at 992.977 kb on + strand, within Atu3897at 993.094 kb on - strand, within Atu3897at 993.130 kb on + strand, within Atu3897at 993.189 kb on - strand, within Atu3897at 993.235 kb on + strand, within Atu3897at 993.250 kb on + strand, within Atu3897at 993.250 kb on + strand, within Atu3897at 993.258 kb on - strand, within Atu3897at 993.315 kb on + strand, within Atu3897at 993.320 kb on + strand, within Atu3897at 993.461 kb on + strand, within Atu3897at 993.474 kb on - strand, within Atu3897at 993.486 kb on + strand, within Atu3897at 993.504 kb on - strand, within Atu3897at 993.505 kb on - strand, within Atu3897at 993.556 kb on + strand, within Atu3897at 993.577 kb on + strand, within Atu3897at 993.584 kb on - strand, within Atu3897at 993.603 kb on - strand, within Atu3897at 993.611 kb on + strand, within Atu3897at 993.733 kb on - strandat 993.746 kb on - strandat 993.795 kb on - strandat 993.943 kb on + strandat 994.000 kb on - strand, within Atu3898at 994.000 kb on - strand, within Atu3898at 994.101 kb on + strand, within Atu3898at 994.124 kb on + strand, within Atu3898at 994.134 kb on + strand, within Atu3898at 994.134 kb on + strand, within Atu3898at 994.134 kb on + strand, within Atu3898at 994.228 kb on + strand, within Atu3898at 994.290 kb on - strand, within Atu3898at 994.290 kb on - strand, within Atu3898at 994.348 kb on - strand, within Atu3898at 994.531 kb on + strand, within Atu3898at 994.550 kb on + strand, within Atu3898at 994.570 kb on + strand, within Atu3898at 994.612 kb on + strandat 994.732 kb on + strandat 994.739 kb on - strandat 994.754 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phage 100.2 + bactiera
remove
991,278 + Atu3896 0.11 +0.6
991,351 + Atu3896 0.18 -0.7
991,368 + Atu3896 0.19 -1.2
991,368 + Atu3896 0.19 -1.1
991,415 + Atu3896 0.24 -1.2
991,415 + Atu3896 0.24 -1.3
991,423 - Atu3896 0.25 -2.2
991,430 - Atu3896 0.25 -1.1
991,510 + Atu3896 0.33 -0.8
991,515 + Atu3896 0.33 -1.7
991,515 + Atu3896 0.33 +0.2
991,515 - Atu3896 0.33 -0.6
991,556 + Atu3896 0.37 -0.8
991,587 + Atu3896 0.40 -1.1
991,597 - Atu3896 0.41 -0.9
991,787 + Atu3896 0.59 -0.2
991,817 - Atu3896 0.61 -1.1
991,852 + Atu3896 0.65 -0.5
991,860 - Atu3896 0.65 -0.8
991,871 + Atu3896 0.66 -0.4
991,879 - Atu3896 0.67 -0.6
991,888 - Atu3896 0.68 -1.1
991,955 - Atu3896 0.74 -0.5
992,023 - Atu3896 0.81 -0.6
992,030 + Atu3896 0.81 +0.8
992,038 + Atu3896 0.82 -1.9
992,041 - Atu3896 0.82 -0.5
992,102 - Atu3896 0.88 -1.6
992,139 + -1.0
992,146 + -1.0
992,189 - -0.1
992,196 + -1.0
992,213 - -1.6
992,283 - -0.2
992,354 + -0.7
992,506 - Atu3897 0.16 -0.3
992,562 + Atu3897 0.19 -0.6
992,569 + Atu3897 0.20 -0.0
992,569 + Atu3897 0.20 -0.3
992,569 + Atu3897 0.20 -1.1
992,577 - Atu3897 0.20 -0.7
992,577 - Atu3897 0.20 -0.8
992,577 - Atu3897 0.20 -0.7
992,577 - Atu3897 0.20 +0.5
992,587 - Atu3897 0.21 -0.2
992,640 - Atu3897 0.24 +0.1
992,640 - Atu3897 0.24 +0.4
992,657 + Atu3897 0.26 +0.3
992,704 + Atu3897 0.29 -1.1
992,712 - Atu3897 0.29 -1.7
992,712 - Atu3897 0.29 -0.8
992,819 - Atu3897 0.36 -0.5
992,828 + Atu3897 0.37 -1.9
992,836 - Atu3897 0.37 +0.1
992,836 - Atu3897 0.37 +0.3
992,922 + Atu3897 0.43 -1.2
992,922 + Atu3897 0.43 +0.3
992,930 - Atu3897 0.43 -0.7
992,930 - Atu3897 0.43 -1.0
992,975 + Atu3897 0.46 -0.8
992,975 + Atu3897 0.46 +1.5
992,975 + Atu3897 0.46 -1.3
992,977 + Atu3897 0.47 -1.0
993,094 - Atu3897 0.54 -1.1
993,130 + Atu3897 0.57 -0.8
993,189 - Atu3897 0.60 +0.6
993,235 + Atu3897 0.63 -0.9
993,250 + Atu3897 0.64 -0.7
993,250 + Atu3897 0.64 -0.5
993,258 - Atu3897 0.65 -0.7
993,315 + Atu3897 0.69 -0.1
993,320 + Atu3897 0.69 -2.8
993,461 + Atu3897 0.78 -1.1
993,474 - Atu3897 0.79 -1.6
993,486 + Atu3897 0.80 -0.7
993,504 - Atu3897 0.81 -0.9
993,505 - Atu3897 0.81 +0.0
993,556 + Atu3897 0.85 -0.9
993,577 + Atu3897 0.86 -0.8
993,584 - Atu3897 0.86 +0.2
993,603 - Atu3897 0.88 -1.5
993,611 + Atu3897 0.88 +0.1
993,733 - -0.3
993,746 - +1.5
993,795 - -0.5
993,943 + -0.3
994,000 - Atu3898 0.13 -0.7
994,000 - Atu3898 0.13 +0.2
994,101 + Atu3898 0.26 -0.2
994,124 + Atu3898 0.29 +0.3
994,134 + Atu3898 0.30 -0.2
994,134 + Atu3898 0.30 +1.2
994,134 + Atu3898 0.30 +1.3
994,228 + Atu3898 0.43 -0.6
994,290 - Atu3898 0.51 +0.4
994,290 - Atu3898 0.51 +0.7
994,348 - Atu3898 0.58 -0.3
994,531 + Atu3898 0.82 +0.3
994,550 + Atu3898 0.84 +1.0
994,570 + Atu3898 0.87 +0.6
994,612 + +0.8
994,732 + -0.8
994,739 - -0.3
994,754 + +1.4

Or see this region's nucleotide sequence