Experiment: Phage 100.1 + bacteria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0453 and Atu0454 overlap by 1 nucleotides Atu0454 and Atu8126 are separated by 208 nucleotides Atu8126 and Atu8127 are separated by 12 nucleotides
Atu0453: Atu0453 - hypothetical protein, at 448,012 to 448,758
Atu0453
Atu0454: Atu0454 - hypothetical protein, at 448,758 to 449,309
Atu0454
Atu8126: Atu8126 - putative phage tail protein I, at 449,518 to 450,183
Atu8126
Atu8127: Atu8127 - hypothetical protein, at 450,196 to 452,397
Atu8127
Position (kb) 449
450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 448.522 kb on - strand, within Atu0453 at 448.548 kb on + strand, within Atu0453 at 448.661 kb on - strand, within Atu0453 at 448.716 kb on + strand at 448.738 kb on + strand at 448.746 kb on - strand at 448.747 kb on + strand at 448.781 kb on - strand at 448.880 kb on - strand, within Atu0454 at 448.882 kb on + strand, within Atu0454 at 448.890 kb on - strand, within Atu0454 at 448.891 kb on + strand, within Atu0454 at 448.900 kb on - strand, within Atu0454 at 448.905 kb on + strand, within Atu0454 at 448.923 kb on - strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.981 kb on - strand, within Atu0454 at 448.981 kb on - strand, within Atu0454 at 449.227 kb on + strand, within Atu0454 at 449.288 kb on - strand at 449.294 kb on - strand at 449.342 kb on - strand at 449.457 kb on + strand at 449.472 kb on - strand at 449.525 kb on + strand at 449.525 kb on + strand at 449.533 kb on - strand at 449.533 kb on - strand at 449.606 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.775 kb on - strand, within Atu8126 at 449.868 kb on - strand, within Atu8126 at 449.920 kb on + strand, within Atu8126 at 449.930 kb on - strand, within Atu8126 at 449.975 kb on + strand, within Atu8126 at 450.109 kb on + strand, within Atu8126 at 450.110 kb on + strand, within Atu8126 at 450.177 kb on + strand at 450.179 kb on + strand at 450.180 kb on - strand at 450.191 kb on + strand at 450.192 kb on - strand at 450.272 kb on + strand at 450.308 kb on + strand at 450.311 kb on - strand at 450.411 kb on + strand at 450.421 kb on + strand, within Atu8127 at 450.455 kb on + strand, within Atu8127 at 450.458 kb on - strand, within Atu8127 at 450.463 kb on - strand, within Atu8127 at 450.465 kb on + strand, within Atu8127 at 450.465 kb on + strand, within Atu8127 at 450.473 kb on - strand, within Atu8127 at 450.478 kb on + strand, within Atu8127 at 450.486 kb on - strand, within Atu8127 at 450.570 kb on - strand, within Atu8127 at 450.660 kb on - strand, within Atu8127 at 450.675 kb on - strand, within Atu8127 at 450.687 kb on + strand, within Atu8127 at 450.731 kb on + strand, within Atu8127 at 450.751 kb on + strand, within Atu8127 at 450.759 kb on - strand, within Atu8127 at 450.834 kb on + strand, within Atu8127 at 450.839 kb on + strand, within Atu8127 at 450.893 kb on + strand, within Atu8127 at 450.998 kb on + strand, within Atu8127 at 451.119 kb on - strand, within Atu8127
Per-strain Table
Position Strand Gene LocusTag Fraction Phage 100.1 + bacteria remove 448,522 - Atu0453 0.68 -0.8 448,548 + Atu0453 0.72 -0.6 448,661 - Atu0453 0.87 -0.8 448,716 + -0.5 448,738 + -1.4 448,746 - -0.6 448,747 + -0.8 448,781 - -1.6 448,880 - Atu0454 0.22 -0.9 448,882 + Atu0454 0.22 -0.7 448,890 - Atu0454 0.24 -0.8 448,891 + Atu0454 0.24 -2.5 448,900 - Atu0454 0.26 -1.0 448,905 + Atu0454 0.27 -0.3 448,923 - Atu0454 0.30 +0.1 448,973 + Atu0454 0.39 -0.9 448,973 + Atu0454 0.39 -0.6 448,973 + Atu0454 0.39 -0.9 448,981 - Atu0454 0.40 -0.7 448,981 - Atu0454 0.40 -1.7 449,227 + Atu0454 0.85 -1.2 449,288 - -0.7 449,294 - -1.0 449,342 - -0.8 449,457 + -2.2 449,472 - -1.3 449,525 + -0.9 449,525 + -0.6 449,533 - +0.0 449,533 - -0.6 449,606 - Atu8126 0.13 -0.8 449,622 - Atu8126 0.16 -0.5 449,622 - Atu8126 0.16 -1.1 449,622 - Atu8126 0.16 -0.7 449,775 - Atu8126 0.39 -1.8 449,868 - Atu8126 0.53 -1.2 449,920 + Atu8126 0.60 -0.8 449,930 - Atu8126 0.62 -1.3 449,975 + Atu8126 0.69 -1.1 450,109 + Atu8126 0.89 -0.9 450,110 + Atu8126 0.89 -1.0 450,177 + -0.7 450,179 + -0.3 450,180 - -1.2 450,191 + +0.1 450,192 - -1.1 450,272 + -1.5 450,308 + -0.4 450,311 - -0.8 450,411 + -0.8 450,421 + Atu8127 0.10 -0.7 450,455 + Atu8127 0.12 -0.8 450,458 - Atu8127 0.12 -1.2 450,463 - Atu8127 0.12 -1.3 450,465 + Atu8127 0.12 -0.7 450,465 + Atu8127 0.12 -0.5 450,473 - Atu8127 0.13 -1.2 450,478 + Atu8127 0.13 -0.8 450,486 - Atu8127 0.13 -1.5 450,570 - Atu8127 0.17 -1.0 450,660 - Atu8127 0.21 -3.3 450,675 - Atu8127 0.22 -0.6 450,687 + Atu8127 0.22 -0.9 450,731 + Atu8127 0.24 -0.8 450,751 + Atu8127 0.25 -1.1 450,759 - Atu8127 0.26 -1.2 450,834 + Atu8127 0.29 -1.3 450,839 + Atu8127 0.29 -1.1 450,893 + Atu8127 0.32 -1.2 450,998 + Atu8127 0.36 -0.9 451,119 - Atu8127 0.42 -1.1
Or see this region's nucleotide sequence