Experiment: Phage 100.1 + bacteria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0470 and Atu0471 are separated by 97 nucleotides Atu0471 and Atu0472 are separated by 443 nucleotides Atu0472 and Atu0473 are separated by 88 nucleotides
Atu0470: Atu0470 - hypothetical protein, at 460,159 to 460,419
Atu0470
Atu0471: Atu0471 - hypothetical protein, at 460,517 to 460,756
Atu0471
Atu0472: Atu0472 - hypothetical protein, at 461,200 to 461,757
Atu0472
Atu0473: Atu0473 - hypothetical protein, at 461,846 to 462,760
Atu0473
Position (kb) 461
462 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 460.275 kb on + strand, within Atu0470 at 460.524 kb on + strand at 460.532 kb on - strand at 460.691 kb on + strand, within Atu0471 at 460.699 kb on - strand, within Atu0471 at 460.699 kb on - strand, within Atu0471 at 460.724 kb on - strand, within Atu0471 at 460.838 kb on - strand at 460.867 kb on - strand at 460.951 kb on + strand at 460.957 kb on - strand at 461.078 kb on - strand at 461.122 kb on + strand at 461.147 kb on + strand at 461.154 kb on - strand at 461.210 kb on - strand at 461.353 kb on + strand, within Atu0472 at 461.354 kb on + strand, within Atu0472 at 461.409 kb on + strand, within Atu0472 at 461.419 kb on + strand, within Atu0472 at 461.440 kb on - strand, within Atu0472 at 461.454 kb on + strand, within Atu0472 at 461.454 kb on + strand, within Atu0472 at 461.454 kb on + strand, within Atu0472 at 461.462 kb on - strand, within Atu0472 at 461.467 kb on + strand, within Atu0472 at 461.512 kb on + strand, within Atu0472 at 461.512 kb on + strand, within Atu0472 at 461.520 kb on - strand, within Atu0472 at 461.520 kb on - strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.555 kb on - strand, within Atu0472 at 461.555 kb on - strand, within Atu0472 at 461.555 kb on - strand, within Atu0472 at 461.690 kb on - strand, within Atu0472 at 461.714 kb on + strand at 461.714 kb on - strand at 461.940 kb on + strand, within Atu0473 at 461.947 kb on + strand, within Atu0473 at 461.948 kb on - strand, within Atu0473 at 461.950 kb on - strand, within Atu0473 at 461.950 kb on - strand, within Atu0473 at 461.955 kb on - strand, within Atu0473 at 461.978 kb on - strand, within Atu0473 at 462.012 kb on - strand, within Atu0473 at 462.028 kb on + strand, within Atu0473 at 462.119 kb on - strand, within Atu0473 at 462.119 kb on - strand, within Atu0473 at 462.119 kb on - strand, within Atu0473 at 462.186 kb on + strand, within Atu0473 at 462.268 kb on - strand, within Atu0473 at 462.268 kb on - strand, within Atu0473 at 462.319 kb on + strand, within Atu0473 at 462.319 kb on + strand, within Atu0473 at 462.327 kb on - strand, within Atu0473 at 462.333 kb on - strand, within Atu0473 at 462.390 kb on - strand, within Atu0473 at 462.409 kb on + strand, within Atu0473 at 462.469 kb on + strand, within Atu0473 at 462.487 kb on - strand, within Atu0473 at 462.516 kb on - strand, within Atu0473 at 462.625 kb on - strand, within Atu0473 at 462.630 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.650 kb on + strand, within Atu0473
Per-strain Table
Position Strand Gene LocusTag Fraction Phage 100.1 + bacteria remove 460,275 + Atu0470 0.44 -1.3 460,524 + +0.0 460,532 - -1.1 460,691 + Atu0471 0.72 -0.9 460,699 - Atu0471 0.76 +0.2 460,699 - Atu0471 0.76 -1.3 460,724 - Atu0471 0.86 -0.3 460,838 - -0.9 460,867 - -0.5 460,951 + +0.8 460,957 - +0.0 461,078 - -0.3 461,122 + -0.2 461,147 + +0.3 461,154 - +0.1 461,210 - +1.0 461,353 + Atu0472 0.27 +0.0 461,354 + Atu0472 0.28 -0.3 461,409 + Atu0472 0.37 -1.0 461,419 + Atu0472 0.39 -2.1 461,440 - Atu0472 0.43 -0.1 461,454 + Atu0472 0.46 +0.5 461,454 + Atu0472 0.46 +0.7 461,454 + Atu0472 0.46 +0.6 461,462 - Atu0472 0.47 -0.4 461,467 + Atu0472 0.48 -0.4 461,512 + Atu0472 0.56 -0.2 461,512 + Atu0472 0.56 -0.0 461,520 - Atu0472 0.57 -0.3 461,520 - Atu0472 0.57 -0.8 461,547 + Atu0472 0.62 -0.6 461,547 + Atu0472 0.62 -0.6 461,547 + Atu0472 0.62 +0.1 461,547 + Atu0472 0.62 +0.1 461,547 + Atu0472 0.62 +0.5 461,547 + Atu0472 0.62 -0.0 461,547 + Atu0472 0.62 -1.5 461,555 - Atu0472 0.64 -0.9 461,555 - Atu0472 0.64 -0.5 461,555 - Atu0472 0.64 +0.3 461,690 - Atu0472 0.88 +0.4 461,714 + +0.1 461,714 - +0.3 461,940 + Atu0473 0.10 -0.3 461,947 + Atu0473 0.11 -0.6 461,948 - Atu0473 0.11 -0.3 461,950 - Atu0473 0.11 -0.6 461,950 - Atu0473 0.11 -0.9 461,955 - Atu0473 0.12 +0.3 461,978 - Atu0473 0.14 -0.3 462,012 - Atu0473 0.18 -0.1 462,028 + Atu0473 0.20 +0.3 462,119 - Atu0473 0.30 +0.3 462,119 - Atu0473 0.30 -0.3 462,119 - Atu0473 0.30 +0.0 462,186 + Atu0473 0.37 -0.1 462,268 - Atu0473 0.46 -0.1 462,268 - Atu0473 0.46 -1.1 462,319 + Atu0473 0.52 -0.3 462,319 + Atu0473 0.52 -0.7 462,327 - Atu0473 0.53 -0.4 462,333 - Atu0473 0.53 +0.5 462,390 - Atu0473 0.59 +3.3 462,409 + Atu0473 0.62 -0.5 462,469 + Atu0473 0.68 -0.6 462,487 - Atu0473 0.70 -0.3 462,516 - Atu0473 0.73 -0.3 462,625 - Atu0473 0.85 -0.8 462,630 - Atu0473 0.86 +0.6 462,635 - Atu0473 0.86 -0.0 462,635 - Atu0473 0.86 +1.7 462,650 + Atu0473 0.88 -0.4
Or see this region's nucleotide sequence