Experiment: Phage 99.2 + bacteria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3019 and Atu3020 are separated by 431 nucleotides Atu3020 and Atu3021 are separated by 30 nucleotides
Atu3019: Atu3019 - hypothetical protein, at 11,703 to 12,239
Atu3019
Atu3020: Atu3020 - GntR family transcriptional regulator, at 12,671 to 13,381
Atu3020
Atu3021: Atu3021 - sugar ABC transporter ATPase, at 13,412 to 14,527
Atu3021
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1 at 11.773 kb on + strand, within Atu3019 at 11.818 kb on + strand, within Atu3019 at 11.887 kb on + strand, within Atu3019 at 11.887 kb on + strand, within Atu3019 at 11.890 kb on + strand, within Atu3019 at 11.895 kb on - strand, within Atu3019 at 11.934 kb on + strand, within Atu3019 at 11.936 kb on + strand, within Atu3019 at 11.942 kb on - strand, within Atu3019 at 11.978 kb on + strand, within Atu3019 at 11.986 kb on - strand, within Atu3019 at 12.044 kb on - strand, within Atu3019 at 12.112 kb on - strand, within Atu3019 at 12.142 kb on + strand, within Atu3019 at 12.223 kb on - strand at 12.237 kb on - strand at 12.294 kb on + strand at 12.358 kb on - strand at 12.380 kb on - strand at 12.392 kb on + strand at 12.397 kb on + strand at 12.476 kb on + strand at 12.483 kb on + strand at 12.483 kb on + strand at 12.491 kb on - strand at 12.491 kb on - strand at 12.491 kb on - strand at 12.497 kb on + strand at 12.785 kb on + strand, within Atu3020 at 12.815 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.984 kb on + strand, within Atu3020 at 13.103 kb on + strand, within Atu3020 at 13.303 kb on + strand, within Atu3020 at 13.303 kb on + strand, within Atu3020 at 13.383 kb on - strand at 13.400 kb on - strand at 13.421 kb on + strand at 13.473 kb on + strand at 13.545 kb on - strand, within Atu3021 at 13.547 kb on - strand, within Atu3021 at 13.659 kb on + strand, within Atu3021 at 13.665 kb on - strand, within Atu3021 at 13.667 kb on + strand, within Atu3021 at 13.671 kb on + strand, within Atu3021 at 13.722 kb on - strand, within Atu3021 at 13.838 kb on + strand, within Atu3021 at 13.846 kb on - strand, within Atu3021 at 13.920 kb on + strand, within Atu3021 at 13.990 kb on - strand, within Atu3021 at 14.051 kb on - strand, within Atu3021 at 14.061 kb on - strand, within Atu3021 at 14.158 kb on + strand, within Atu3021 at 14.198 kb on - strand, within Atu3021 at 14.198 kb on - strand, within Atu3021 at 14.200 kb on + strand, within Atu3021 at 14.221 kb on - strand, within Atu3021 at 14.221 kb on - strand, within Atu3021
Per-strain Table
Position Strand Gene LocusTag Fraction Phage 99.2 + bacteria remove 11,773 + Atu3019 0.13 -1.1 11,818 + Atu3019 0.21 -0.9 11,887 + Atu3019 0.34 -0.4 11,887 + Atu3019 0.34 +0.0 11,890 + Atu3019 0.35 +0.1 11,895 - Atu3019 0.36 -0.7 11,934 + Atu3019 0.43 -1.0 11,936 + Atu3019 0.43 -1.6 11,942 - Atu3019 0.45 -1.7 11,978 + Atu3019 0.51 -0.8 11,986 - Atu3019 0.53 -1.1 12,044 - Atu3019 0.64 -0.4 12,112 - Atu3019 0.76 -1.2 12,142 + Atu3019 0.82 -0.8 12,223 - -1.0 12,237 - +0.1 12,294 + -0.9 12,358 - -0.6 12,380 - -0.8 12,392 + +0.4 12,397 + +0.6 12,476 + -1.0 12,483 + -1.5 12,483 + -0.9 12,491 - -1.4 12,491 - -0.9 12,491 - +1.6 12,497 + +0.1 12,785 + Atu3020 0.16 -0.8 12,815 + Atu3020 0.20 -1.3 12,970 + Atu3020 0.42 -1.3 12,970 + Atu3020 0.42 -0.1 12,970 + Atu3020 0.42 -0.4 12,970 + Atu3020 0.42 -1.9 12,970 + Atu3020 0.42 -1.1 12,970 + Atu3020 0.42 -0.9 12,984 + Atu3020 0.44 -1.2 13,103 + Atu3020 0.61 -1.7 13,303 + Atu3020 0.89 +0.6 13,303 + Atu3020 0.89 -0.7 13,383 - +0.1 13,400 - -0.7 13,421 + +0.0 13,473 + -1.2 13,545 - Atu3021 0.12 -0.9 13,547 - Atu3021 0.12 -0.9 13,659 + Atu3021 0.22 -0.7 13,665 - Atu3021 0.23 -2.0 13,667 + Atu3021 0.23 -1.3 13,671 + Atu3021 0.23 -1.1 13,722 - Atu3021 0.28 -1.5 13,838 + Atu3021 0.38 +0.3 13,846 - Atu3021 0.39 -0.9 13,920 + Atu3021 0.46 -0.4 13,990 - Atu3021 0.52 -0.3 14,051 - Atu3021 0.57 +0.9 14,061 - Atu3021 0.58 -1.3 14,158 + Atu3021 0.67 -0.5 14,198 - Atu3021 0.70 +0.5 14,198 - Atu3021 0.70 -0.3 14,200 + Atu3021 0.71 -1.1 14,221 - Atu3021 0.72 +0.4 14,221 - Atu3021 0.72 -0.9
Or see this region's nucleotide sequence