Experiment: Phage 97.3 + bacteria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0462 and Atu0463 overlap by 25 nucleotides Atu0463 and Atu0464 are separated by 87 nucleotides Atu0464 and Atu0465 are separated by 50 nucleotides Atu0465 and Atu0466 are separated by 2 nucleotides Atu0466 and Atu0467 are separated by 128 nucleotides
Atu0462: Atu0462 - endolysin, at 456,537 to 457,178
Atu0462
Atu0463: Atu0463 - hypothetical protein, at 457,154 to 457,471
Atu0463
Atu0464: Atu0464 - hypothetical protein, at 457,559 to 457,882
Atu0464
Atu0465: Atu0465 - transcriptional regulator, at 457,933 to 458,391
Atu0465
Atu0466: Atu0466 - hypothetical protein, at 458,394 to 458,753
Atu0466
Atu0467: Atu0467 - hypothetical protein, at 458,882 to 459,028
Atu0467
Position (kb) 457
458 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 456.562 kb on + strand at 456.562 kb on + strand at 456.570 kb on - strand at 456.586 kb on + strand at 456.601 kb on + strand at 456.606 kb on + strand, within Atu0462 at 456.609 kb on - strand, within Atu0462 at 456.618 kb on + strand, within Atu0462 at 456.647 kb on + strand, within Atu0462 at 456.655 kb on - strand, within Atu0462 at 456.655 kb on - strand, within Atu0462 at 456.688 kb on - strand, within Atu0462 at 456.708 kb on + strand, within Atu0462 at 456.716 kb on - strand, within Atu0462 at 456.731 kb on - strand, within Atu0462 at 456.740 kb on + strand, within Atu0462 at 456.789 kb on + strand, within Atu0462 at 456.797 kb on - strand, within Atu0462 at 456.804 kb on + strand, within Atu0462 at 456.886 kb on + strand, within Atu0462 at 456.964 kb on - strand, within Atu0462 at 456.989 kb on + strand, within Atu0462 at 456.991 kb on - strand, within Atu0462 at 457.019 kb on + strand, within Atu0462 at 457.025 kb on - strand, within Atu0462 at 457.050 kb on - strand, within Atu0462 at 457.050 kb on - strand, within Atu0462 at 457.073 kb on - strand, within Atu0462 at 457.073 kb on - strand, within Atu0462 at 457.083 kb on - strand, within Atu0462 at 457.156 kb on + strand at 457.201 kb on + strand, within Atu0463 at 457.209 kb on - strand, within Atu0463 at 457.306 kb on + strand, within Atu0463 at 457.568 kb on + strand at 457.716 kb on - strand, within Atu0464 at 457.734 kb on + strand, within Atu0464 at 457.757 kb on + strand, within Atu0464 at 457.791 kb on - strand, within Atu0464 at 457.808 kb on + strand, within Atu0464 at 457.818 kb on + strand, within Atu0464 at 457.818 kb on + strand, within Atu0464 at 457.818 kb on + strand, within Atu0464 at 457.818 kb on + strand, within Atu0464 at 457.826 kb on - strand, within Atu0464 at 457.833 kb on + strand, within Atu0464 at 457.841 kb on - strand, within Atu0464 at 457.841 kb on - strand, within Atu0464 at 457.928 kb on - strand at 457.928 kb on - strand at 457.940 kb on + strand at 458.738 kb on + strand at 458.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phage 97.3 + bacteria remove 456,562 + -0.2 456,562 + +1.0 456,570 - -0.2 456,586 + -0.4 456,601 + -0.5 456,606 + Atu0462 0.11 +0.1 456,609 - Atu0462 0.11 -0.4 456,618 + Atu0462 0.13 +0.0 456,647 + Atu0462 0.17 -0.2 456,655 - Atu0462 0.18 -1.4 456,655 - Atu0462 0.18 -0.1 456,688 - Atu0462 0.24 -1.0 456,708 + Atu0462 0.27 -2.2 456,716 - Atu0462 0.28 -1.1 456,731 - Atu0462 0.30 -0.5 456,740 + Atu0462 0.32 +0.1 456,789 + Atu0462 0.39 +0.0 456,797 - Atu0462 0.40 +0.2 456,804 + Atu0462 0.42 +0.0 456,886 + Atu0462 0.54 -0.5 456,964 - Atu0462 0.67 -0.9 456,989 + Atu0462 0.70 -0.1 456,991 - Atu0462 0.71 -0.5 457,019 + Atu0462 0.75 -0.8 457,025 - Atu0462 0.76 -0.9 457,050 - Atu0462 0.80 -0.7 457,050 - Atu0462 0.80 -0.8 457,073 - Atu0462 0.83 -1.4 457,073 - Atu0462 0.83 +0.4 457,083 - Atu0462 0.85 -0.7 457,156 + -0.2 457,201 + Atu0463 0.15 -1.1 457,209 - Atu0463 0.17 -1.9 457,306 + Atu0463 0.48 -0.7 457,568 + -1.8 457,716 - Atu0464 0.48 -2.6 457,734 + Atu0464 0.54 -1.4 457,757 + Atu0464 0.61 -1.8 457,791 - Atu0464 0.72 -2.8 457,808 + Atu0464 0.77 -1.4 457,818 + Atu0464 0.80 -3.2 457,818 + Atu0464 0.80 -2.5 457,818 + Atu0464 0.80 -1.2 457,818 + Atu0464 0.80 -1.1 457,826 - Atu0464 0.82 -2.3 457,833 + Atu0464 0.85 -1.2 457,841 - Atu0464 0.87 -1.5 457,841 - Atu0464 0.87 -2.2 457,928 - -0.7 457,928 - -1.2 457,940 + -4.7 458,738 + -1.1 458,775 - -1.9
Or see this region's nucleotide sequence