Strain Fitness in Agrobacterium fabrum C58 around Atu0179

Experiment: Phage 97.2 + bacteria

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0178 and Atu0179 are separated by 133 nucleotidesAtu0179 and Atu0180 are separated by 1 nucleotidesAtu0180 and Atu0181 overlap by 4 nucleotides Atu0178: Atu0178 - hypothetical protein, at 181,722 to 182,624 Atu0178 Atu0179: Atu0179 - hypothetical protein, at 182,758 to 183,867 Atu0179 Atu0180: Atu0180 - hypothetical protein, at 183,869 to 184,480 Atu0180 Atu0181: Atu0181 - hypothetical protein, at 184,477 to 184,938 Atu0181 Position (kb) 182 183 184Strain fitness (log2 ratio) -1 0 1at 181.835 kb on - strand, within Atu0178at 181.836 kb on + strand, within Atu0178at 181.887 kb on - strand, within Atu0178at 181.901 kb on + strand, within Atu0178at 181.945 kb on + strand, within Atu0178at 181.953 kb on - strand, within Atu0178at 181.958 kb on - strand, within Atu0178at 181.958 kb on - strand, within Atu0178at 181.968 kb on - strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 182.002 kb on - strand, within Atu0178at 182.002 kb on - strand, within Atu0178at 182.036 kb on - strand, within Atu0178at 182.072 kb on - strand, within Atu0178at 182.088 kb on + strand, within Atu0178at 182.088 kb on + strand, within Atu0178at 182.150 kb on + strand, within Atu0178at 182.150 kb on + strand, within Atu0178at 182.159 kb on + strand, within Atu0178at 182.167 kb on - strand, within Atu0178at 182.167 kb on - strand, within Atu0178at 182.167 kb on - strand, within Atu0178at 182.208 kb on + strand, within Atu0178at 182.238 kb on + strand, within Atu0178at 182.247 kb on - strand, within Atu0178at 182.317 kb on - strand, within Atu0178at 182.332 kb on - strand, within Atu0178at 182.469 kb on + strand, within Atu0178at 182.498 kb on - strand, within Atu0178at 182.580 kb on + strandat 182.628 kb on + strandat 182.649 kb on - strandat 182.948 kb on - strand, within Atu0179at 182.953 kb on - strand, within Atu0179at 183.076 kb on - strand, within Atu0179at 183.088 kb on - strand, within Atu0179at 183.088 kb on - strand, within Atu0179at 183.236 kb on - strand, within Atu0179at 183.446 kb on + strand, within Atu0179at 183.446 kb on - strand, within Atu0179at 183.469 kb on - strand, within Atu0179at 183.479 kb on - strand, within Atu0179at 183.545 kb on - strand, within Atu0179at 183.546 kb on - strand, within Atu0179at 183.566 kb on + strand, within Atu0179at 183.573 kb on + strand, within Atu0179at 183.573 kb on + strand, within Atu0179at 183.623 kb on - strand, within Atu0179at 183.644 kb on - strand, within Atu0179at 183.782 kb on + strandat 183.824 kb on + strandat 183.848 kb on + strandat 183.855 kb on - strandat 183.868 kb on - strandat 183.882 kb on + strandat 183.883 kb on - strandat 183.883 kb on - strandat 183.942 kb on - strand, within Atu0180at 183.948 kb on - strand, within Atu0180at 183.968 kb on + strand, within Atu0180at 183.970 kb on + strand, within Atu0180at 183.983 kb on - strand, within Atu0180at 183.983 kb on - strand, within Atu0180at 184.121 kb on - strand, within Atu0180at 184.158 kb on + strand, within Atu0180at 184.238 kb on + strand, within Atu0180at 184.251 kb on + strand, within Atu0180at 184.259 kb on - strand, within Atu0180at 184.339 kb on + strand, within Atu0180at 184.366 kb on + strand, within Atu0180at 184.400 kb on - strand, within Atu0180at 184.475 kb on + strandat 184.483 kb on - strandat 184.483 kb on - strandat 184.483 kb on - strandat 184.487 kb on + strandat 184.582 kb on - strand, within Atu0181at 184.618 kb on - strand, within Atu0181at 184.694 kb on - strand, within Atu0181at 184.782 kb on - strand, within Atu0181at 184.843 kb on + strand, within Atu0181

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage 97.2 + bacteria
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181,835 - Atu0178 0.13 -0.9
181,836 + Atu0178 0.13 -1.0
181,887 - Atu0178 0.18 -0.3
181,901 + Atu0178 0.20 +0.6
181,945 + Atu0178 0.25 +1.4
181,953 - Atu0178 0.26 -1.3
181,958 - Atu0178 0.26 +0.3
181,958 - Atu0178 0.26 -0.2
181,968 - Atu0178 0.27 -0.0
181,994 + Atu0178 0.30 -0.5
181,994 + Atu0178 0.30 -0.6
181,994 + Atu0178 0.30 -0.4
181,994 + Atu0178 0.30 +0.2
182,002 - Atu0178 0.31 -0.2
182,002 - Atu0178 0.31 +0.2
182,036 - Atu0178 0.35 -0.3
182,072 - Atu0178 0.39 -0.1
182,088 + Atu0178 0.41 -0.7
182,088 + Atu0178 0.41 +0.2
182,150 + Atu0178 0.47 -1.4
182,150 + Atu0178 0.47 +0.1
182,159 + Atu0178 0.48 +1.0
182,167 - Atu0178 0.49 +0.1
182,167 - Atu0178 0.49 +0.0
182,167 - Atu0178 0.49 -0.3
182,208 + Atu0178 0.54 +0.5
182,238 + Atu0178 0.57 -0.0
182,247 - Atu0178 0.58 -0.0
182,317 - Atu0178 0.66 +0.2
182,332 - Atu0178 0.68 -0.1
182,469 + Atu0178 0.83 -0.4
182,498 - Atu0178 0.86 -0.0
182,580 + -1.1
182,628 + -1.0
182,649 - -0.7
182,948 - Atu0179 0.17 -0.6
182,953 - Atu0179 0.18 -0.2
183,076 - Atu0179 0.29 -1.4
183,088 - Atu0179 0.30 +0.4
183,088 - Atu0179 0.30 -0.3
183,236 - Atu0179 0.43 -0.0
183,446 + Atu0179 0.62 -0.9
183,446 - Atu0179 0.62 +0.9
183,469 - Atu0179 0.64 +0.1
183,479 - Atu0179 0.65 -0.8
183,545 - Atu0179 0.71 -0.3
183,546 - Atu0179 0.71 -1.4
183,566 + Atu0179 0.73 +0.3
183,573 + Atu0179 0.73 -0.7
183,573 + Atu0179 0.73 -0.4
183,623 - Atu0179 0.78 -0.4
183,644 - Atu0179 0.80 -1.0
183,782 + +0.2
183,824 + +0.3
183,848 + +0.1
183,855 - -0.2
183,868 - +0.3
183,882 + +0.5
183,883 - -0.2
183,883 - +0.1
183,942 - Atu0180 0.12 +0.4
183,948 - Atu0180 0.13 +0.4
183,968 + Atu0180 0.16 -0.4
183,970 + Atu0180 0.17 -0.6
183,983 - Atu0180 0.19 +0.1
183,983 - Atu0180 0.19 +0.2
184,121 - Atu0180 0.41 -0.1
184,158 + Atu0180 0.47 -0.4
184,238 + Atu0180 0.60 -0.4
184,251 + Atu0180 0.62 -0.2
184,259 - Atu0180 0.64 +0.2
184,339 + Atu0180 0.77 +0.1
184,366 + Atu0180 0.81 +0.3
184,400 - Atu0180 0.87 +0.0
184,475 + -0.1
184,483 - -0.2
184,483 - +0.1
184,483 - -0.5
184,487 + +1.0
184,582 - Atu0181 0.23 +0.3
184,618 - Atu0181 0.31 +1.6
184,694 - Atu0181 0.47 -0.1
184,782 - Atu0181 0.66 -0.1
184,843 + Atu0181 0.79 -0.2

Or see this region's nucleotide sequence