Experiment: Phage 97.1 + bacteria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4184 and Atu4185 are separated by 259 nucleotides Atu4185 and Atu4186 are separated by 72 nucleotides Atu4186 and Atu4187 are separated by 239 nucleotides Atu4187 and Atu4189 are separated by 324 nucleotides
Atu4184: Atu4184 - 23S ribosomal RNA, at 1,307,206 to 1,309,440
Atu4184
Atu4185: Atu4185 - hypothetical protein, at 1,309,700 to 1,309,999
Atu4185
Atu4186: Atu4186 - 5S ribosomal RNA, at 1,310,072 to 1,310,190
Atu4186
Atu4187: Atu4187 - tRNA-Met, at 1,310,430 to 1,310,506
Atu4187
Atu4189: Atu4189 - dihydropicolinate synthase, at 1,310,831 to 1,311,727
Atu4189
Position (kb) 1310
1311 Strain fitness (log2 ratio) -1
0
1 at 1310.335 kb on - strand at 1310.469 kb on + strand, within Atu4187 at 1311.087 kb on + strand, within Atu4189 at 1311.095 kb on - strand, within Atu4189 at 1311.167 kb on + strand, within Atu4189 at 1311.261 kb on + strand, within Atu4189 at 1311.304 kb on + strand, within Atu4189 at 1311.340 kb on - strand, within Atu4189 at 1311.340 kb on - strand, within Atu4189 at 1311.490 kb on + strand, within Atu4189 at 1311.498 kb on - strand, within Atu4189
Per-strain Table
Position Strand Gene LocusTag Fraction Phage 97.1 + bacteria remove 1,310,335 - -0.5 1,310,469 + Atu4187 0.51 -0.9 1,311,087 + Atu4189 0.29 -0.6 1,311,095 - Atu4189 0.29 +0.4 1,311,167 + Atu4189 0.37 -0.2 1,311,261 + Atu4189 0.48 +0.1 1,311,304 + Atu4189 0.53 -0.1 1,311,340 - Atu4189 0.57 -0.5 1,311,340 - Atu4189 0.57 +0.0 1,311,490 + Atu4189 0.73 +0.2 1,311,498 - Atu4189 0.74 -0.2
Or see this region's nucleotide sequence