Experiment: Phage 97.1 + bacteria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0918 and Atu0919 are separated by 21 nucleotides Atu0919 and Atu0920 are separated by 212 nucleotides Atu0920 and Atu0921 are separated by 487 nucleotides
Atu0918: Atu0918 - hypothetical protein, at 906,447 to 907,283
Atu0918
Atu0919: Atu0919 - hypothetical protein, at 907,305 to 907,721
Atu0919
Atu0920: Atu0920 - hypothetical protein, at 907,934 to 908,359
Atu0920
Atu0921: Atu0921 - two component sensor kinase, at 908,847 to 910,379
Atu0921
Position (kb) 907
908
909 Strain fitness (log2 ratio) -1
0
1 at 906.999 kb on - strand, within Atu0918 at 906.999 kb on - strand, within Atu0918 at 907.001 kb on + strand, within Atu0918 at 907.004 kb on - strand, within Atu0918 at 907.004 kb on - strand, within Atu0918 at 907.083 kb on + strand, within Atu0918 at 907.173 kb on - strand, within Atu0918 at 907.175 kb on + strand, within Atu0918 at 907.175 kb on + strand, within Atu0918 at 907.220 kb on + strand at 907.220 kb on + strand at 907.228 kb on - strand at 907.228 kb on - strand at 907.239 kb on - strand at 907.724 kb on - strand at 907.790 kb on - strand at 907.858 kb on + strand at 907.866 kb on - strand at 908.075 kb on - strand, within Atu0920 at 908.127 kb on - strand, within Atu0920 at 908.210 kb on + strand, within Atu0920 at 908.230 kb on - strand, within Atu0920 at 908.298 kb on + strand, within Atu0920 at 908.298 kb on + strand, within Atu0920 at 908.298 kb on + strand, within Atu0920 at 908.306 kb on - strand, within Atu0920 at 908.467 kb on - strand at 908.563 kb on - strand at 908.577 kb on - strand at 908.592 kb on + strand at 908.592 kb on + strand at 908.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phage 97.1 + bacteria remove 906,999 - Atu0918 0.66 -0.8 906,999 - Atu0918 0.66 +0.4 907,001 + Atu0918 0.66 -0.1 907,004 - Atu0918 0.67 +0.7 907,004 - Atu0918 0.67 -0.2 907,083 + Atu0918 0.76 -0.1 907,173 - Atu0918 0.87 -0.3 907,175 + Atu0918 0.87 +0.8 907,175 + Atu0918 0.87 -0.7 907,220 + -1.1 907,220 + -0.1 907,228 - -0.1 907,228 - +0.1 907,239 - -0.5 907,724 - +0.8 907,790 - -0.7 907,858 + -0.6 907,866 - +0.3 908,075 - Atu0920 0.33 -0.4 908,127 - Atu0920 0.45 -1.5 908,210 + Atu0920 0.65 +0.2 908,230 - Atu0920 0.69 -0.9 908,298 + Atu0920 0.85 +0.9 908,298 + Atu0920 0.85 -0.9 908,298 + Atu0920 0.85 -0.1 908,306 - Atu0920 0.87 -0.8 908,467 - +0.3 908,563 - +0.1 908,577 - -1.3 908,592 + +0.2 908,592 + -0.6 908,644 - -0.3
Or see this region's nucleotide sequence