Experiment: Phage 95.3 + bacteria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3268 and Atu3269 are separated by 362 nucleotides Atu3269 and Atu3270 are separated by 59 nucleotides Atu3270 and Atu3271 are separated by 136 nucleotides
Atu3268: Atu3268 - dipeptide ABC transporter permease, at 287,017 to 287,925
Atu3268
Atu3269: Atu3269 - dipeptide ABC transporter substrate-binding protein, at 288,288 to 289,814
Atu3269
Atu3270: Atu3270 - hypothetical protein, at 289,874 to 290,116
Atu3270
Atu3271: Atu3271 - glycosyltransferase, at 290,253 to 291,377
Atu3271
Position (kb) 288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 287.385 kb on + strand, within Atu3268 at 287.508 kb on + strand, within Atu3268 at 287.680 kb on + strand, within Atu3268 at 287.688 kb on + strand, within Atu3268 at 287.688 kb on - strand, within Atu3268 at 287.688 kb on - strand, within Atu3268 at 287.696 kb on - strand, within Atu3268 at 287.753 kb on + strand, within Atu3268 at 287.772 kb on + strand, within Atu3268 at 287.792 kb on - strand, within Atu3268 at 287.797 kb on - strand, within Atu3268 at 287.880 kb on + strand at 288.091 kb on + strand at 288.189 kb on - strand at 288.285 kb on + strand at 288.349 kb on - strand at 288.503 kb on + strand, within Atu3269 at 288.599 kb on + strand, within Atu3269 at 288.604 kb on + strand, within Atu3269 at 288.620 kb on + strand, within Atu3269 at 288.620 kb on + strand, within Atu3269 at 288.625 kb on + strand, within Atu3269 at 288.627 kb on + strand, within Atu3269 at 288.789 kb on - strand, within Atu3269 at 288.935 kb on - strand, within Atu3269 at 288.969 kb on - strand, within Atu3269 at 289.038 kb on + strand, within Atu3269 at 289.180 kb on - strand, within Atu3269 at 289.233 kb on + strand, within Atu3269 at 289.259 kb on + strand, within Atu3269 at 289.376 kb on + strand, within Atu3269 at 289.379 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.437 kb on + strand, within Atu3269 at 289.549 kb on + strand, within Atu3269 at 289.549 kb on - strand, within Atu3269 at 289.626 kb on + strand, within Atu3269 at 289.635 kb on - strand, within Atu3269 at 289.750 kb on + strand at 289.762 kb on + strand at 289.998 kb on + strand, within Atu3270 at 290.006 kb on - strand, within Atu3270 at 290.017 kb on + strand, within Atu3270 at 290.211 kb on - strand at 290.356 kb on - strand at 290.361 kb on + strand at 290.490 kb on - strand, within Atu3271 at 290.520 kb on - strand, within Atu3271 at 290.557 kb on - strand, within Atu3271 at 290.694 kb on + strand, within Atu3271 at 290.698 kb on - strand, within Atu3271 at 290.809 kb on - strand, within Atu3271
Per-strain Table
Position Strand Gene LocusTag Fraction Phage 95.3 + bacteria remove 287,385 + Atu3268 0.40 +0.1 287,508 + Atu3268 0.54 -0.6 287,680 + Atu3268 0.73 -0.1 287,688 + Atu3268 0.74 -0.3 287,688 - Atu3268 0.74 +1.3 287,688 - Atu3268 0.74 -0.1 287,696 - Atu3268 0.75 +0.4 287,753 + Atu3268 0.81 -0.5 287,772 + Atu3268 0.83 +0.3 287,792 - Atu3268 0.85 -0.2 287,797 - Atu3268 0.86 +0.6 287,880 + +1.7 288,091 + -0.4 288,189 - +1.4 288,285 + -0.7 288,349 - +0.1 288,503 + Atu3269 0.14 -0.6 288,599 + Atu3269 0.20 +0.2 288,604 + Atu3269 0.21 -0.0 288,620 + Atu3269 0.22 -0.4 288,620 + Atu3269 0.22 +1.1 288,625 + Atu3269 0.22 +0.3 288,627 + Atu3269 0.22 -1.0 288,789 - Atu3269 0.33 -0.8 288,935 - Atu3269 0.42 +0.3 288,969 - Atu3269 0.45 +0.8 289,038 + Atu3269 0.49 +0.6 289,180 - Atu3269 0.58 +1.9 289,233 + Atu3269 0.62 +0.5 289,259 + Atu3269 0.64 -0.4 289,376 + Atu3269 0.71 +0.2 289,379 - Atu3269 0.71 -0.4 289,384 - Atu3269 0.72 -0.2 289,384 - Atu3269 0.72 +1.2 289,384 - Atu3269 0.72 -0.5 289,384 - Atu3269 0.72 -0.8 289,384 - Atu3269 0.72 +1.9 289,437 + Atu3269 0.75 +6.3 289,549 + Atu3269 0.83 -0.2 289,549 - Atu3269 0.83 +0.3 289,626 + Atu3269 0.88 +0.8 289,635 - Atu3269 0.88 -0.1 289,750 + -0.9 289,762 + -0.3 289,998 + Atu3270 0.51 +0.2 290,006 - Atu3270 0.54 -0.6 290,017 + Atu3270 0.59 -0.6 290,211 - +0.2 290,356 - -0.0 290,361 + +0.2 290,490 - Atu3271 0.21 -3.2 290,520 - Atu3271 0.24 -0.0 290,557 - Atu3271 0.27 +0.1 290,694 + Atu3271 0.39 -0.1 290,698 - Atu3271 0.40 +1.7 290,809 - Atu3271 0.49 -0.3
Or see this region's nucleotide sequence