Strain Fitness in Agrobacterium fabrum C58 around Atu2186

Experiment: Phage 95.3 + bacteria

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2185 and Atu2186 are separated by 18 nucleotidesAtu2186 and Atu2187 are separated by 600 nucleotides Atu2185: Atu2185 - thioredoxin reductase, at 2,161,161 to 2,162,135 Atu2185 Atu2186: Atu2186 - transcriptional regulator, LysR family, at 2,162,154 to 2,163,056 Atu2186 Atu2187: Atu2187 - transcriptional regulator, ArsR family, at 2,163,657 to 2,163,947 Atu2187 Position (kb) 2162 2163 2164Strain fitness (log2 ratio) -1 0 1at 2163.181 kb on + strandat 2163.196 kb on + strandat 2163.204 kb on - strandat 2163.329 kb on + strandat 2163.763 kb on + strand, within Atu2187at 2163.763 kb on + strand, within Atu2187at 2163.763 kb on + strand, within Atu2187at 2163.907 kb on + strand, within Atu2187at 2164.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage 95.3 + bacteria
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2,163,181 + -0.2
2,163,196 + +0.4
2,163,204 - -1.5
2,163,329 + +0.3
2,163,763 + Atu2187 0.36 +0.0
2,163,763 + Atu2187 0.36 -0.7
2,163,763 + Atu2187 0.36 +1.2
2,163,907 + Atu2187 0.86 -0.5
2,164,045 - +0.5

Or see this region's nucleotide sequence