Strain Fitness in Agrobacterium fabrum C58 around Atu0278

Experiment: Phage 95.3 + bacteria

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0275 and Atu0276 are separated by 12 nucleotidesAtu0276 and Atu0277 are separated by 93 nucleotidesAtu0277 and Atu0278 are separated by 86 nucleotidesAtu0278 and Atu0279 overlap by 2 nucleotidesAtu0279 and Atu0280 are separated by 141 nucleotides Atu0275: Atu0275 - hypothetical protein, at 271,492 to 271,968 Atu0275 Atu0276: Atu0276 - hypothetical protein, at 271,981 to 272,328 Atu0276 Atu0277: Atu0277 - hypothetical protein, at 272,422 to 272,817 Atu0277 Atu0278: Atu0278 - hypothetical protein, at 272,904 to 273,791 Atu0278 Atu0279: Atu0279 - transcriptional regulator, TetR family, at 273,790 to 274,368 Atu0279 Atu0280: Atu0280 - hypothetical protein, at 274,510 to 274,998 Atu0280 Position (kb) 272 273 274Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 271.952 kb on - strandat 271.958 kb on + strandat 271.958 kb on + strandat 272.027 kb on + strand, within Atu0276at 272.049 kb on - strand, within Atu0276at 272.195 kb on + strand, within Atu0276at 272.257 kb on + strand, within Atu0276at 272.270 kb on - strand, within Atu0276at 272.322 kb on + strandat 272.485 kb on - strand, within Atu0277at 272.518 kb on - strand, within Atu0277at 272.552 kb on + strand, within Atu0277at 272.620 kb on + strand, within Atu0277at 272.655 kb on + strand, within Atu0277at 272.655 kb on + strand, within Atu0277at 272.718 kb on + strand, within Atu0277at 272.718 kb on + strand, within Atu0277at 272.726 kb on - strand, within Atu0277at 272.726 kb on - strand, within Atu0277at 272.731 kb on - strand, within Atu0277at 272.804 kb on + strandat 272.875 kb on - strandat 272.974 kb on + strandat 273.095 kb on - strand, within Atu0278at 273.169 kb on + strand, within Atu0278at 273.252 kb on + strand, within Atu0278at 273.257 kb on + strand, within Atu0278at 273.260 kb on - strand, within Atu0278at 273.260 kb on - strand, within Atu0278at 273.291 kb on - strand, within Atu0278at 273.388 kb on + strand, within Atu0278at 273.388 kb on + strand, within Atu0278at 273.388 kb on + strand, within Atu0278at 273.391 kb on - strand, within Atu0278at 273.398 kb on + strand, within Atu0278at 273.401 kb on - strand, within Atu0278at 273.421 kb on + strand, within Atu0278at 273.421 kb on + strand, within Atu0278at 273.421 kb on + strand, within Atu0278at 273.429 kb on - strand, within Atu0278at 273.429 kb on - strand, within Atu0278at 273.429 kb on - strand, within Atu0278at 273.429 kb on - strand, within Atu0278at 273.429 kb on - strand, within Atu0278at 273.429 kb on - strand, within Atu0278at 273.433 kb on + strand, within Atu0278at 273.510 kb on + strand, within Atu0278at 273.584 kb on + strand, within Atu0278at 273.609 kb on + strand, within Atu0278at 273.635 kb on - strand, within Atu0278at 273.639 kb on + strand, within Atu0278at 273.737 kb on + strandat 273.799 kb on + strandat 273.833 kb on + strandat 273.843 kb on + strandat 273.843 kb on + strandat 273.843 kb on + strandat 273.856 kb on + strand, within Atu0279at 273.856 kb on + strand, within Atu0279at 273.948 kb on + strand, within Atu0279at 274.145 kb on + strand, within Atu0279at 274.208 kb on + strand, within Atu0279at 274.223 kb on + strand, within Atu0279at 274.223 kb on + strand, within Atu0279at 274.248 kb on + strand, within Atu0279at 274.248 kb on + strand, within Atu0279at 274.248 kb on + strand, within Atu0279at 274.278 kb on + strand, within Atu0279at 274.283 kb on + strand, within Atu0279at 274.353 kb on + strandat 274.361 kb on - strandat 274.376 kb on - strandat 274.433 kb on - strandat 274.446 kb on + strandat 274.544 kb on - strandat 274.663 kb on - strand, within Atu0280at 274.791 kb on - strand, within Atu0280

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage 95.3 + bacteria
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271,952 - -1.3
271,958 + -0.5
271,958 + -0.1
272,027 + Atu0276 0.13 +0.4
272,049 - Atu0276 0.20 -0.5
272,195 + Atu0276 0.61 -1.5
272,257 + Atu0276 0.79 +1.0
272,270 - Atu0276 0.83 +0.1
272,322 + +1.0
272,485 - Atu0277 0.16 -0.8
272,518 - Atu0277 0.24 +0.1
272,552 + Atu0277 0.33 -0.5
272,620 + Atu0277 0.50 +0.6
272,655 + Atu0277 0.59 -0.0
272,655 + Atu0277 0.59 -0.6
272,718 + Atu0277 0.75 +2.0
272,718 + Atu0277 0.75 -1.6
272,726 - Atu0277 0.77 +2.0
272,726 - Atu0277 0.77 +0.1
272,731 - Atu0277 0.78 -0.6
272,804 + +0.3
272,875 - -0.3
272,974 + -0.4
273,095 - Atu0278 0.22 +0.2
273,169 + Atu0278 0.30 +0.2
273,252 + Atu0278 0.39 -0.2
273,257 + Atu0278 0.40 -1.2
273,260 - Atu0278 0.40 -0.7
273,260 - Atu0278 0.40 -0.1
273,291 - Atu0278 0.44 -0.4
273,388 + Atu0278 0.55 +0.0
273,388 + Atu0278 0.55 +0.2
273,388 + Atu0278 0.55 -0.9
273,391 - Atu0278 0.55 -0.2
273,398 + Atu0278 0.56 +5.9
273,401 - Atu0278 0.56 +0.9
273,421 + Atu0278 0.58 -0.8
273,421 + Atu0278 0.58 +0.6
273,421 + Atu0278 0.58 +0.1
273,429 - Atu0278 0.59 +1.4
273,429 - Atu0278 0.59 +0.1
273,429 - Atu0278 0.59 +0.1
273,429 - Atu0278 0.59 +0.8
273,429 - Atu0278 0.59 -2.1
273,429 - Atu0278 0.59 -0.6
273,433 + Atu0278 0.60 -0.6
273,510 + Atu0278 0.68 -0.6
273,584 + Atu0278 0.77 -0.0
273,609 + Atu0278 0.79 -0.2
273,635 - Atu0278 0.82 +0.8
273,639 + Atu0278 0.83 -0.5
273,737 + -0.2
273,799 + +0.0
273,833 + +0.5
273,843 + +1.4
273,843 + +1.4
273,843 + +0.3
273,856 + Atu0279 0.11 -1.0
273,856 + Atu0279 0.11 -0.1
273,948 + Atu0279 0.27 -0.4
274,145 + Atu0279 0.61 -0.3
274,208 + Atu0279 0.72 -0.1
274,223 + Atu0279 0.75 -0.2
274,223 + Atu0279 0.75 -0.4
274,248 + Atu0279 0.79 +0.4
274,248 + Atu0279 0.79 +0.4
274,248 + Atu0279 0.79 -0.3
274,278 + Atu0279 0.84 -1.4
274,283 + Atu0279 0.85 -0.7
274,353 + -1.4
274,361 - +0.4
274,376 - -0.2
274,433 - -0.1
274,446 + +0.5
274,544 - +0.2
274,663 - Atu0280 0.31 -0.9
274,791 - Atu0280 0.57 -0.6

Or see this region's nucleotide sequence