Experiment: Phage 95.3 + bacteria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3420 and Atu3421 are separated by 23 nucleotides Atu3421 and Atu3423 are separated by 302 nucleotides Atu3423 and Atu3424 are separated by 27 nucleotides
Atu3420: Atu3420 - monooxygenase, at 467,960 to 469,300
Atu3420
Atu3421: Atu3421 - hypothetical protein, at 469,324 to 470,325
Atu3421
Atu3423: Atu3423 - hypothetical protein, at 470,628 to 471,077
Atu3423
Atu3424: Atu3424 - hypothetical protein, at 471,105 to 472,049
Atu3424
Position (kb) 469
470
471 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 468.418 kb on + strand, within Atu3420 at 468.426 kb on + strand, within Atu3420 at 468.525 kb on + strand, within Atu3420 at 468.525 kb on + strand, within Atu3420 at 468.530 kb on + strand, within Atu3420 at 468.533 kb on - strand, within Atu3420 at 468.535 kb on + strand, within Atu3420 at 468.535 kb on + strand, within Atu3420 at 468.548 kb on + strand, within Atu3420 at 468.548 kb on + strand, within Atu3420 at 468.550 kb on + strand, within Atu3420 at 468.560 kb on + strand, within Atu3420 at 468.582 kb on - strand, within Atu3420 at 468.732 kb on + strand, within Atu3420 at 468.791 kb on + strand, within Atu3420 at 468.843 kb on - strand, within Atu3420 at 468.866 kb on - strand, within Atu3420 at 469.010 kb on + strand, within Atu3420 at 469.010 kb on + strand, within Atu3420 at 469.029 kb on + strand, within Atu3420 at 469.247 kb on - strand at 469.375 kb on + strand at 469.385 kb on + strand at 469.490 kb on + strand, within Atu3421 at 469.498 kb on - strand, within Atu3421 at 469.498 kb on - strand, within Atu3421 at 469.598 kb on - strand, within Atu3421 at 469.613 kb on + strand, within Atu3421 at 469.782 kb on + strand, within Atu3421 at 469.870 kb on + strand, within Atu3421 at 470.076 kb on - strand, within Atu3421 at 470.109 kb on - strand, within Atu3421 at 470.126 kb on + strand, within Atu3421 at 470.303 kb on - strand at 470.448 kb on + strand at 470.448 kb on + strand at 470.612 kb on + strand at 470.965 kb on - strand, within Atu3423 at 471.013 kb on - strand, within Atu3423 at 471.038 kb on + strand at 471.051 kb on - strand at 471.056 kb on - strand at 471.177 kb on - strand at 471.254 kb on - strand, within Atu3424 at 471.254 kb on - strand, within Atu3424 at 471.285 kb on - strand, within Atu3424 at 471.289 kb on + strand, within Atu3424
Per-strain Table
Position Strand Gene LocusTag Fraction Phage 95.3 + bacteria remove 468,418 + Atu3420 0.34 -0.4 468,426 + Atu3420 0.35 -0.9 468,525 + Atu3420 0.42 -1.2 468,525 + Atu3420 0.42 -0.6 468,530 + Atu3420 0.43 +0.8 468,533 - Atu3420 0.43 +6.5 468,535 + Atu3420 0.43 +0.1 468,535 + Atu3420 0.43 +0.5 468,548 + Atu3420 0.44 +0.4 468,548 + Atu3420 0.44 +1.1 468,550 + Atu3420 0.44 -0.0 468,560 + Atu3420 0.45 -0.8 468,582 - Atu3420 0.46 -0.4 468,732 + Atu3420 0.58 -0.3 468,791 + Atu3420 0.62 +1.4 468,843 - Atu3420 0.66 +1.4 468,866 - Atu3420 0.68 -0.3 469,010 + Atu3420 0.78 +0.9 469,010 + Atu3420 0.78 -0.2 469,029 + Atu3420 0.80 -0.4 469,247 - -0.3 469,375 + -0.8 469,385 + -0.9 469,490 + Atu3421 0.17 +0.1 469,498 - Atu3421 0.17 +0.2 469,498 - Atu3421 0.17 +0.2 469,598 - Atu3421 0.27 +1.7 469,613 + Atu3421 0.29 -0.2 469,782 + Atu3421 0.46 -0.5 469,870 + Atu3421 0.54 +1.1 470,076 - Atu3421 0.75 +0.1 470,109 - Atu3421 0.78 +0.5 470,126 + Atu3421 0.80 +0.4 470,303 - -0.3 470,448 + -0.7 470,448 + -0.1 470,612 + +0.7 470,965 - Atu3423 0.75 +2.7 471,013 - Atu3423 0.86 -0.0 471,038 + +0.0 471,051 - +0.4 471,056 - -1.9 471,177 - +0.2 471,254 - Atu3424 0.16 -0.9 471,254 - Atu3424 0.16 -0.2 471,285 - Atu3424 0.19 -0.6 471,289 + Atu3424 0.19 +0.7
Or see this region's nucleotide sequence