Strain Fitness in Agrobacterium fabrum C58 around Atu0004

Experiment: Phage 95.3 + bacteria

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0002 and Atu0003 overlap by 8 nucleotidesAtu0003 and Atu0004 overlap by 1 nucleotidesAtu0004 and Atu0005 are separated by 20 nucleotidesAtu0005 and Atu0006 are separated by 98 nucleotides Atu0002: Atu0002 - putative inhibitor of septum formation, at 1,056 to 1,655 Atu0002 Atu0003: Atu0003 - shikimate 5-dehydrogenase, at 1,648 to 2,508 Atu0003 Atu0004: Atu0004 - dephospho-CoA kinase, at 2,508 to 3,089 Atu0004 Atu0005: Atu0005 - DNA polymerase III, epsilon chain, at 3,110 to 3,808 Atu0005 Atu0006: Atu0006 - protein-export protein SECB, at 3,907 to 4,389 Atu0006 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1at 3.844 kb on + strandat 3.928 kb on - strandat 3.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage 95.3 + bacteria
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3,844 + -0.9
3,928 - -0.6
3,928 - -0.3

Or see this region's nucleotide sequence