Experiment: Phage 95.1 + bacteria
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0189 and Atu0190 are separated by 5 nucleotides
Atu0189: Atu0189 - ABC transporter, membrane spanning protein (peptide), at 192,608 to 193,753
Atu0189
Atu0190: Atu0190 - ABC transporter, nucleotide binding/ATPase protein (peptide), at 193,759 to 195,399
Atu0190
Position (kb) 193
194
195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 192.959 kb on - strand, within Atu0189 at 193.621 kb on + strand, within Atu0189 at 193.635 kb on - strand, within Atu0189 at 193.647 kb on + strand at 193.647 kb on + strand at 193.655 kb on - strand at 193.725 kb on + strand at 193.735 kb on + strand at 193.825 kb on + strand at 193.864 kb on - strand at 194.003 kb on + strand, within Atu0190 at 194.025 kb on + strand, within Atu0190 at 194.362 kb on - strand, within Atu0190 at 194.388 kb on + strand, within Atu0190 at 194.466 kb on + strand, within Atu0190 at 194.497 kb on - strand, within Atu0190 at 194.507 kb on - strand, within Atu0190 at 194.520 kb on + strand, within Atu0190 at 194.529 kb on - strand, within Atu0190 at 194.687 kb on + strand, within Atu0190 at 194.704 kb on + strand, within Atu0190 at 194.895 kb on - strand, within Atu0190 at 194.997 kb on + strand, within Atu0190 at 195.136 kb on + strand, within Atu0190 at 195.146 kb on - strand, within Atu0190 at 195.146 kb on - strand, within Atu0190 at 195.199 kb on - strand, within Atu0190 at 195.218 kb on + strand, within Atu0190 at 195.223 kb on + strand, within Atu0190 at 195.280 kb on + strand at 195.327 kb on + strand at 195.327 kb on + strand at 195.335 kb on - strand at 195.335 kb on - strand at 195.457 kb on + strand at 195.462 kb on + strand at 195.482 kb on + strand at 195.596 kb on + strand at 195.604 kb on - strand at 195.639 kb on + strand at 195.639 kb on + strand at 195.647 kb on - strand at 195.673 kb on + strand at 195.673 kb on + strand at 195.698 kb on + strand at 195.699 kb on - strand at 195.793 kb on + strand at 195.843 kb on - strand at 195.851 kb on - strand at 195.921 kb on + strand at 196.015 kb on + strand at 196.020 kb on + strand at 196.083 kb on - strand at 196.085 kb on - strand at 196.126 kb on + strand at 196.128 kb on + strand at 196.142 kb on + strand at 196.167 kb on + strand at 196.194 kb on + strand at 196.200 kb on - strand at 196.200 kb on - strand at 196.200 kb on - strand at 196.274 kb on + strand at 196.275 kb on + strand at 196.285 kb on + strand at 196.345 kb on - strand at 196.347 kb on + strand at 196.355 kb on - strand at 196.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phage 95.1 + bacteria remove 192,959 - Atu0189 0.31 -3.0 193,621 + Atu0189 0.88 -2.7 193,635 - Atu0189 0.90 -2.2 193,647 + +0.2 193,647 + -2.5 193,655 - -1.8 193,725 + -0.3 193,735 + -1.6 193,825 + -3.0 193,864 - -2.3 194,003 + Atu0190 0.15 -2.8 194,025 + Atu0190 0.16 -3.5 194,362 - Atu0190 0.37 -2.1 194,388 + Atu0190 0.38 -2.2 194,466 + Atu0190 0.43 -0.7 194,497 - Atu0190 0.45 -2.3 194,507 - Atu0190 0.46 -2.0 194,520 + Atu0190 0.46 -2.0 194,529 - Atu0190 0.47 -2.6 194,687 + Atu0190 0.57 -2.2 194,704 + Atu0190 0.58 -2.6 194,895 - Atu0190 0.69 -0.8 194,997 + Atu0190 0.75 -2.9 195,136 + Atu0190 0.84 -2.6 195,146 - Atu0190 0.85 -2.2 195,146 - Atu0190 0.85 -1.6 195,199 - Atu0190 0.88 -2.6 195,218 + Atu0190 0.89 -2.4 195,223 + Atu0190 0.89 -3.5 195,280 + -2.4 195,327 + -0.4 195,327 + -1.6 195,335 - -0.1 195,335 - +0.4 195,457 + -0.4 195,462 + -0.5 195,482 + +0.1 195,596 + -0.2 195,604 - -0.2 195,639 + -0.6 195,639 + +0.1 195,647 - -0.2 195,673 + +0.1 195,673 + -0.0 195,698 + -0.8 195,699 - -0.3 195,793 + -0.6 195,843 - -0.0 195,851 - +1.8 195,921 + -0.2 196,015 + -0.4 196,020 + +0.2 196,083 - -0.3 196,085 - -0.1 196,126 + -0.0 196,128 + -0.7 196,142 + +0.4 196,167 + +0.1 196,194 + +0.6 196,200 - -0.2 196,200 - -0.5 196,200 - +1.2 196,274 + +0.3 196,275 + +0.3 196,285 + +1.2 196,345 - -0.2 196,347 + -0.1 196,355 - +0.7 196,362 - -0.6
Or see this region's nucleotide sequence