Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03135 and PS417_03140 are separated by 2 nucleotides PS417_03140 and PS417_03145 are separated by 114 nucleotides
PS417_03135: PS417_03135 - acyl dehydratase, at 719,558 to 720,406
_03135
PS417_03140: PS417_03140 - 3-ketoacyl-ACP reductase, at 720,409 to 721,752
_03140
PS417_03145: PS417_03145 - acetyl-CoA acetyltransferase, at 721,867 to 723,144
_03145
Position (kb) 720
721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 719.534 kb on - strand at 719.535 kb on + strand at 719.535 kb on + strand at 719.535 kb on + strand at 719.537 kb on + strand at 719.539 kb on + strand at 719.587 kb on + strand at 719.657 kb on + strand, within PS417_03135 at 719.657 kb on + strand, within PS417_03135 at 719.658 kb on - strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 720.213 kb on + strand, within PS417_03135 at 720.214 kb on - strand, within PS417_03135 at 720.214 kb on - strand, within PS417_03135 at 720.383 kb on - strand at 720.383 kb on - strand at 720.383 kb on - strand at 720.410 kb on + strand at 720.410 kb on + strand at 720.410 kb on + strand at 720.411 kb on - strand at 720.411 kb on - strand at 720.574 kb on - strand, within PS417_03140 at 721.194 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.547 kb on + strand, within PS417_03140 at 721.553 kb on + strand, within PS417_03140 at 721.553 kb on + strand, within PS417_03140 at 721.554 kb on - strand, within PS417_03140 at 721.738 kb on - strand at 721.739 kb on + strand at 721.739 kb on + strand at 721.887 kb on - strand at 721.997 kb on - strand, within PS417_03145 at 722.673 kb on - strand, within PS417_03145
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 719,534 - +1.1 719,535 + -0.2 719,535 + -0.3 719,535 + -0.4 719,537 + +0.4 719,539 + -0.5 719,587 + -0.3 719,657 + PS417_03135 0.12 -0.4 719,657 + PS417_03135 0.12 -0.1 719,658 - PS417_03135 0.12 -1.8 719,987 + PS417_03135 0.51 +0.3 719,987 + PS417_03135 0.51 +0.9 719,987 + PS417_03135 0.51 +0.8 720,213 + PS417_03135 0.77 +0.2 720,214 - PS417_03135 0.77 +0.1 720,214 - PS417_03135 0.77 -1.1 720,383 - +1.3 720,383 - -0.2 720,383 - -1.0 720,410 + -0.5 720,410 + -0.3 720,410 + -0.4 720,411 - -0.0 720,411 - -1.8 720,574 - PS417_03140 0.12 -2.8 721,194 + PS417_03140 0.58 +0.3 721,196 + PS417_03140 0.59 -0.6 721,196 + PS417_03140 0.59 -0.3 721,196 + PS417_03140 0.59 -1.1 721,197 - PS417_03140 0.59 -0.4 721,197 - PS417_03140 0.59 -1.2 721,197 - PS417_03140 0.59 -1.0 721,547 + PS417_03140 0.85 +0.0 721,553 + PS417_03140 0.85 +0.1 721,553 + PS417_03140 0.85 -0.1 721,554 - PS417_03140 0.85 -0.1 721,738 - +0.4 721,739 + -0.3 721,739 + +0.3 721,887 - -2.1 721,997 - PS417_03145 0.10 +0.2 722,673 - PS417_03145 0.63 +1.4
Or see this region's nucleotide sequence