Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26030 and PS417_26035 are separated by 223 nucleotides PS417_26035 and PS417_26040 are separated by 267 nucleotides
PS417_26030: PS417_26030 - chloramphenical resistance permease RarD, at 5,624,544 to 5,625,428
_26030
PS417_26035: PS417_26035 - glycine cleavage system protein R, at 5,625,652 to 5,626,164
_26035
PS417_26040: PS417_26040 - malate synthase, at 5,626,432 to 5,628,609
_26040
Position (kb) 5625
5626
5627 Strain fitness (log2 ratio) -2
-1
0
1 at 5624.663 kb on - strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.812 kb on - strand, within PS417_26030 at 5624.812 kb on - strand, within PS417_26030 at 5624.812 kb on - strand at 5624.812 kb on - strand, within PS417_26030 at 5624.860 kb on - strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5625.258 kb on + strand, within PS417_26030 at 5625.401 kb on + strand at 5625.439 kb on + strand at 5625.636 kb on + strand at 5625.637 kb on - strand at 5625.706 kb on + strand, within PS417_26035 at 5625.706 kb on + strand, within PS417_26035 at 5625.706 kb on - strand, within PS417_26035 at 5625.804 kb on + strand, within PS417_26035 at 5626.140 kb on + strand at 5626.141 kb on - strand at 5626.150 kb on + strand at 5626.189 kb on + strand at 5626.190 kb on - strand at 5626.324 kb on + strand at 5626.325 kb on - strand at 5626.325 kb on - strand at 5626.329 kb on - strand at 5626.360 kb on + strand at 5626.360 kb on + strand at 5626.360 kb on + strand at 5626.360 kb on + strand at 5626.361 kb on - strand at 5626.363 kb on + strand at 5626.363 kb on + strand at 5626.363 kb on + strand at 5626.364 kb on - strand at 5626.380 kb on + strand at 5626.380 kb on + strand at 5626.380 kb on + strand at 5626.380 kb on + strand at 5626.381 kb on - strand at 5626.381 kb on - strand at 5626.384 kb on + strand at 5626.847 kb on - strand, within PS417_26040 at 5626.858 kb on + strand, within PS417_26040 at 5626.859 kb on - strand, within PS417_26040 at 5626.910 kb on - strand, within PS417_26040 at 5626.910 kb on - strand, within PS417_26040 at 5626.920 kb on - strand, within PS417_26040
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 5,624,663 - PS417_26030 0.13 +0.7 5,624,811 + PS417_26030 0.30 -0.4 5,624,811 + PS417_26030 0.30 -1.9 5,624,811 + PS417_26030 0.30 -0.2 5,624,811 + PS417_26030 0.30 -1.2 5,624,812 - PS417_26030 0.30 -0.1 5,624,812 - PS417_26030 0.30 -0.0 5,624,812 - +1.7 5,624,812 - PS417_26030 0.30 -0.6 5,624,860 - PS417_26030 0.36 +0.6 5,624,862 + PS417_26030 0.36 +1.1 5,624,862 + PS417_26030 0.36 -0.2 5,624,862 + PS417_26030 0.36 -0.7 5,624,862 + PS417_26030 0.36 -0.2 5,624,862 + PS417_26030 0.36 +0.1 5,624,863 - PS417_26030 0.36 -0.1 5,624,863 - PS417_26030 0.36 +1.3 5,624,863 - PS417_26030 0.36 -0.3 5,624,863 - PS417_26030 0.36 -0.2 5,625,258 + PS417_26030 0.81 +0.5 5,625,401 + +1.6 5,625,439 + +0.4 5,625,636 + -0.2 5,625,637 - +0.5 5,625,706 + PS417_26035 0.11 -0.2 5,625,706 + PS417_26035 0.11 +0.1 5,625,706 - PS417_26035 0.11 +0.2 5,625,804 + PS417_26035 0.30 +1.7 5,626,140 + +0.9 5,626,141 - -1.0 5,626,150 + -0.5 5,626,189 + +1.1 5,626,190 - -0.6 5,626,324 + -0.5 5,626,325 - -1.5 5,626,325 - -0.2 5,626,329 - -1.3 5,626,360 + -0.9 5,626,360 + -0.4 5,626,360 + -0.3 5,626,360 + -0.3 5,626,361 - -0.6 5,626,363 + +0.8 5,626,363 + -0.9 5,626,363 + -0.0 5,626,364 - -0.1 5,626,380 + +0.7 5,626,380 + -0.3 5,626,380 + -1.3 5,626,380 + +1.4 5,626,381 - -1.5 5,626,381 - -0.6 5,626,384 + -0.8 5,626,847 - PS417_26040 0.19 -2.6 5,626,858 + PS417_26040 0.20 -1.2 5,626,859 - PS417_26040 0.20 -0.5 5,626,910 - PS417_26040 0.22 +0.3 5,626,910 - PS417_26040 0.22 +0.7 5,626,920 - PS417_26040 0.22 +1.3
Or see this region's nucleotide sequence