Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24880 and PS417_24885 are separated by 67 nucleotides PS417_24885 and PS417_24890 are separated by 164 nucleotides PS417_24890 and PS417_24895 are separated by 93 nucleotides
PS417_24880: PS417_24880 - hypothetical protein, at 5,395,300 to 5,396,268
_24880
PS417_24885: PS417_24885 - transcriptional regulator, at 5,396,336 to 5,396,581
_24885
PS417_24890: PS417_24890 - transferase, at 5,396,746 to 5,397,390
_24890
PS417_24895: PS417_24895 - hypothetical protein, at 5,397,484 to 5,397,672
_24895
Position (kb) 5396
5397 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5395.338 kb on + strand at 5395.507 kb on + strand, within PS417_24880 at 5395.641 kb on + strand, within PS417_24880 at 5395.641 kb on + strand, within PS417_24880 at 5395.642 kb on - strand, within PS417_24880 at 5395.642 kb on - strand, within PS417_24880 at 5395.809 kb on + strand, within PS417_24880 at 5395.810 kb on - strand, within PS417_24880 at 5395.983 kb on + strand, within PS417_24880 at 5396.011 kb on + strand, within PS417_24880 at 5396.012 kb on - strand, within PS417_24880 at 5396.012 kb on - strand, within PS417_24880 at 5396.012 kb on - strand, within PS417_24880 at 5396.012 kb on - strand, within PS417_24880 at 5396.405 kb on + strand, within PS417_24885 at 5396.405 kb on + strand, within PS417_24885 at 5396.446 kb on + strand, within PS417_24885 at 5396.446 kb on + strand, within PS417_24885 at 5396.446 kb on + strand, within PS417_24885 at 5396.447 kb on - strand, within PS417_24885 at 5396.447 kb on - strand, within PS417_24885 at 5396.558 kb on + strand at 5396.586 kb on + strand at 5396.668 kb on + strand at 5396.668 kb on + strand at 5396.668 kb on + strand at 5396.668 kb on + strand at 5396.669 kb on - strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.731 kb on - strand at 5396.759 kb on + strand at 5396.759 kb on + strand at 5396.760 kb on - strand at 5396.825 kb on + strand, within PS417_24890 at 5396.841 kb on - strand, within PS417_24890 at 5396.875 kb on + strand, within PS417_24890 at 5396.891 kb on + strand, within PS417_24890 at 5397.018 kb on + strand, within PS417_24890 at 5397.027 kb on - strand, within PS417_24890 at 5397.027 kb on - strand, within PS417_24890 at 5397.027 kb on - strand, within PS417_24890 at 5397.075 kb on + strand, within PS417_24890 at 5397.107 kb on + strand, within PS417_24890 at 5397.123 kb on + strand, within PS417_24890 at 5397.184 kb on - strand, within PS417_24890 at 5397.246 kb on + strand, within PS417_24890 at 5397.342 kb on - strand at 5397.457 kb on - strand at 5397.564 kb on - strand, within PS417_24895 at 5397.575 kb on + strand, within PS417_24895
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 5,395,338 + +0.5 5,395,507 + PS417_24880 0.21 -1.1 5,395,641 + PS417_24880 0.35 +0.6 5,395,641 + PS417_24880 0.35 +0.9 5,395,642 - PS417_24880 0.35 -0.8 5,395,642 - PS417_24880 0.35 -1.9 5,395,809 + PS417_24880 0.53 -0.1 5,395,810 - PS417_24880 0.53 +0.0 5,395,983 + PS417_24880 0.70 -0.6 5,396,011 + PS417_24880 0.73 +0.2 5,396,012 - PS417_24880 0.73 +0.2 5,396,012 - PS417_24880 0.73 +0.4 5,396,012 - PS417_24880 0.73 +0.5 5,396,012 - PS417_24880 0.73 -0.7 5,396,405 + PS417_24885 0.28 +3.4 5,396,405 + PS417_24885 0.28 +2.4 5,396,446 + PS417_24885 0.45 +3.1 5,396,446 + PS417_24885 0.45 +3.2 5,396,446 + PS417_24885 0.45 +2.9 5,396,447 - PS417_24885 0.45 +1.0 5,396,447 - PS417_24885 0.45 +0.1 5,396,558 + +3.8 5,396,586 + +3.5 5,396,668 + +0.9 5,396,668 + +1.7 5,396,668 + +2.7 5,396,668 + +0.5 5,396,669 - +2.1 5,396,672 + +0.4 5,396,672 + +0.7 5,396,672 + +1.2 5,396,672 + +0.9 5,396,672 + +1.7 5,396,672 + +2.1 5,396,731 - -0.2 5,396,759 + -0.3 5,396,759 + -0.7 5,396,760 - +0.1 5,396,825 + PS417_24890 0.12 +0.9 5,396,841 - PS417_24890 0.15 +0.5 5,396,875 + PS417_24890 0.20 -2.2 5,396,891 + PS417_24890 0.22 +0.3 5,397,018 + PS417_24890 0.42 -0.5 5,397,027 - PS417_24890 0.44 -0.2 5,397,027 - PS417_24890 0.44 -0.5 5,397,027 - PS417_24890 0.44 -0.1 5,397,075 + PS417_24890 0.51 +0.2 5,397,107 + PS417_24890 0.56 -0.7 5,397,123 + PS417_24890 0.58 +0.2 5,397,184 - PS417_24890 0.68 -0.6 5,397,246 + PS417_24890 0.78 +1.0 5,397,342 - +1.0 5,397,457 - +0.1 5,397,564 - PS417_24895 0.42 -0.5 5,397,575 + PS417_24895 0.48 -1.9
Or see this region's nucleotide sequence