Strain Fitness in Pseudomonas simiae WCS417 around PS417_06470

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06460 and PS417_06465 are separated by 198 nucleotidesPS417_06465 and PS417_06470 overlap by 4 nucleotidesPS417_06470 and PS417_06475 are separated by 131 nucleotidesPS417_06475 and PS417_06480 overlap by 4 nucleotidesPS417_06480 and PS417_06485 are separated by 20 nucleotides PS417_06460: PS417_06460 - TonB-dependent receptor, at 1,432,339 to 1,434,720 _06460 PS417_06465: PS417_06465 - transcriptional regulator, at 1,434,919 to 1,435,629 _06465 PS417_06470: PS417_06470 - histidine kinase, at 1,435,626 to 1,437,011 _06470 PS417_06475: PS417_06475 - zinc chelation protein SecC, at 1,437,143 to 1,437,343 _06475 PS417_06480: PS417_06480 - hypothetical protein, at 1,437,340 to 1,437,822 _06480 PS417_06485: PS417_06485 - hypothetical protein, at 1,437,843 to 1,438,313 _06485 Position (kb) 1435 1436 1437 1438Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1434.743 kb on - strandat 1434.772 kb on + strandat 1434.772 kb on + strandat 1434.772 kb on + strandat 1434.773 kb on - strandat 1434.773 kb on - strandat 1434.824 kb on + strandat 1434.835 kb on - strandat 1434.848 kb on - strandat 1435.219 kb on + strand, within PS417_06465at 1435.220 kb on - strand, within PS417_06465at 1435.370 kb on + strand, within PS417_06465at 1435.370 kb on + strand, within PS417_06465at 1435.883 kb on + strand, within PS417_06470at 1435.887 kb on - strand, within PS417_06470at 1435.943 kb on - strand, within PS417_06470at 1435.963 kb on - strand, within PS417_06470at 1436.166 kb on + strand, within PS417_06470at 1436.167 kb on - strand, within PS417_06470at 1436.167 kb on - strand, within PS417_06470at 1436.181 kb on + strand, within PS417_06470at 1436.182 kb on - strand, within PS417_06470at 1436.182 kb on - strand, within PS417_06470at 1436.200 kb on + strand, within PS417_06470at 1436.778 kb on - strand, within PS417_06470at 1437.027 kb on + strandat 1437.027 kb on + strandat 1437.028 kb on - strandat 1437.408 kb on - strand, within PS417_06480at 1437.418 kb on + strand, within PS417_06480at 1437.419 kb on - strand, within PS417_06480at 1437.540 kb on + strand, within PS417_06480at 1437.541 kb on - strand, within PS417_06480at 1437.671 kb on + strand, within PS417_06480at 1437.809 kb on + strandat 1437.809 kb on + strandat 1437.850 kb on + strandat 1437.851 kb on - strandat 1437.943 kb on + strand, within PS417_06485at 1437.944 kb on - strand, within PS417_06485at 1437.963 kb on + strand, within PS417_06485at 1437.963 kb on + strand, within PS417_06485at 1437.989 kb on + strand, within PS417_06485at 1437.990 kb on - strand, within PS417_06485at 1437.990 kb on - strandat 1437.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,434,743 - +0.6
1,434,772 + +0.5
1,434,772 + -1.0
1,434,772 + +1.2
1,434,773 - +0.0
1,434,773 - +0.4
1,434,824 + -0.0
1,434,835 - -0.4
1,434,848 - +2.3
1,435,219 + PS417_06465 0.42 -2.3
1,435,220 - PS417_06465 0.42 -0.8
1,435,370 + PS417_06465 0.63 -1.0
1,435,370 + PS417_06465 0.63 -0.9
1,435,883 + PS417_06470 0.19 -2.0
1,435,887 - PS417_06470 0.19 -0.2
1,435,943 - PS417_06470 0.23 +0.2
1,435,963 - PS417_06470 0.24 -0.3
1,436,166 + PS417_06470 0.39 -1.8
1,436,167 - PS417_06470 0.39 +0.2
1,436,167 - PS417_06470 0.39 -0.9
1,436,181 + PS417_06470 0.40 +1.4
1,436,182 - PS417_06470 0.40 -0.4
1,436,182 - PS417_06470 0.40 +0.0
1,436,200 + PS417_06470 0.41 -0.3
1,436,778 - PS417_06470 0.83 -0.4
1,437,027 + -0.6
1,437,027 + -0.7
1,437,028 - -0.9
1,437,408 - PS417_06480 0.14 -2.1
1,437,418 + PS417_06480 0.16 -0.1
1,437,419 - PS417_06480 0.16 +0.2
1,437,540 + PS417_06480 0.41 +1.2
1,437,541 - PS417_06480 0.42 -1.3
1,437,671 + PS417_06480 0.69 +0.3
1,437,809 + +2.0
1,437,809 + +0.7
1,437,850 + -0.3
1,437,851 - -0.5
1,437,943 + PS417_06485 0.21 -1.4
1,437,944 - PS417_06485 0.21 +0.1
1,437,963 + PS417_06485 0.25 +0.4
1,437,963 + PS417_06485 0.25 +0.6
1,437,989 + PS417_06485 0.31 +0.5
1,437,990 - PS417_06485 0.31 +1.2
1,437,990 - +2.7
1,437,990 - +5.5

Or see this region's nucleotide sequence