Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22960 and PS417_22965 are separated by 36 nucleotides PS417_22965 and PS417_22970 are separated by 149 nucleotides PS417_22970 and PS417_22975 are separated by 37 nucleotides PS417_22975 and PS417_22980 are separated by 263 nucleotides
PS417_22960: PS417_22960 - hypothetical protein, at 4,973,394 to 4,973,918
_22960
PS417_22965: PS417_22965 - DNA mismatch repair protein MutT, at 4,973,955 to 4,974,557
_22965
PS417_22970: PS417_22970 - ADP-ribose pyrophosphatase, at 4,974,707 to 4,975,255
_22970
PS417_22975: PS417_22975 - hypothetical protein, at 4,975,293 to 4,975,796
_22975
PS417_22980: PS417_22980 - GntR family transcriptional regulator, at 4,976,060 to 4,976,818
_22980
Position (kb) 4974
4975
4976 Strain fitness (log2 ratio) -1
0
1
2
3 at 4973.912 kb on - strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.957 kb on - strand at 4973.957 kb on - strand at 4974.030 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.092 kb on - strand, within PS417_22965 at 4974.098 kb on + strand at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.203 kb on - strand, within PS417_22965 at 4974.212 kb on - strand, within PS417_22965 at 4974.312 kb on + strand, within PS417_22965 at 4974.313 kb on - strand, within PS417_22965 at 4974.543 kb on + strand at 4974.543 kb on + strand at 4974.543 kb on + strand at 4975.000 kb on + strand, within PS417_22970 at 4975.000 kb on + strand, within PS417_22970 at 4975.004 kb on + strand, within PS417_22970 at 4975.027 kb on + strand, within PS417_22970 at 4975.028 kb on - strand, within PS417_22970 at 4975.043 kb on - strand, within PS417_22970 at 4975.170 kb on + strand, within PS417_22970 at 4975.291 kb on + strand at 4975.740 kb on - strand, within PS417_22975 at 4975.827 kb on + strand at 4975.860 kb on + strand at 4975.903 kb on - strand at 4975.913 kb on - strand at 4976.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 4,973,912 - -1.2 4,973,956 + +0.7 4,973,956 + -0.0 4,973,956 + +0.2 4,973,956 + +0.9 4,973,957 - +0.2 4,973,957 - +0.5 4,974,030 + PS417_22965 0.12 +0.7 4,974,091 + PS417_22965 0.23 +0.0 4,974,091 + PS417_22965 0.23 +1.5 4,974,091 + PS417_22965 0.23 -0.6 4,974,092 - PS417_22965 0.23 -0.2 4,974,098 + -0.3 4,974,099 - PS417_22965 0.24 -0.8 4,974,099 - PS417_22965 0.24 -0.2 4,974,099 - PS417_22965 0.24 -1.1 4,974,099 - PS417_22965 0.24 -0.1 4,974,203 - PS417_22965 0.41 +2.2 4,974,212 - PS417_22965 0.43 -0.5 4,974,312 + PS417_22965 0.59 +0.5 4,974,313 - PS417_22965 0.59 +0.7 4,974,543 + +0.8 4,974,543 + -0.6 4,974,543 + -0.0 4,975,000 + PS417_22970 0.53 +0.9 4,975,000 + PS417_22970 0.53 +3.6 4,975,004 + PS417_22970 0.54 -0.1 4,975,027 + PS417_22970 0.58 +0.7 4,975,028 - PS417_22970 0.58 +0.0 4,975,043 - PS417_22970 0.61 -0.9 4,975,170 + PS417_22970 0.84 +0.1 4,975,291 + -0.4 4,975,740 - PS417_22975 0.89 +0.4 4,975,827 + -0.4 4,975,860 + +0.1 4,975,903 - -1.0 4,975,913 - -1.0 4,976,111 + -0.8
Or see this region's nucleotide sequence