Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03640 and PS417_03645 overlap by 14 nucleotides PS417_03645 and PS417_03650 overlap by 4 nucleotides PS417_03650 and PS417_03655 overlap by 4 nucleotides PS417_03655 and PS417_03660 overlap by 4 nucleotides
PS417_03640: PS417_03640 - cyclopropane-fatty-acyl-phospholipid synthase, at 825,073 to 826,344
_03640
PS417_03645: PS417_03645 - hypothetical protein, at 826,331 to 827,140
_03645
PS417_03650: PS417_03650 - FAD-dependent oxidoreductase, at 827,137 to 828,384
_03650
PS417_03655: PS417_03655 - short-chain dehydrogenase, at 828,381 to 829,163
_03655
PS417_03660: PS417_03660 - transcriptional regulator, at 829,160 to 829,582
_03660
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 826.198 kb on + strand, within PS417_03640 at 826.243 kb on + strand at 826.243 kb on + strand at 826.244 kb on - strand at 826.244 kb on - strand at 826.244 kb on - strand at 826.244 kb on - strand at 826.449 kb on + strand, within PS417_03645 at 826.449 kb on + strand, within PS417_03645 at 826.449 kb on + strand, within PS417_03645 at 826.450 kb on - strand, within PS417_03645 at 826.450 kb on - strand at 826.497 kb on + strand, within PS417_03645 at 826.498 kb on - strand, within PS417_03645 at 826.629 kb on + strand, within PS417_03645 at 826.729 kb on - strand, within PS417_03645 at 826.729 kb on - strand, within PS417_03645 at 826.806 kb on + strand, within PS417_03645 at 826.807 kb on - strand, within PS417_03645 at 826.826 kb on - strand, within PS417_03645 at 826.882 kb on + strand, within PS417_03645 at 826.883 kb on - strand, within PS417_03645 at 826.883 kb on - strand, within PS417_03645 at 826.959 kb on + strand, within PS417_03645 at 827.225 kb on + strand at 827.226 kb on - strand at 827.248 kb on + strand at 827.291 kb on + strand, within PS417_03650 at 827.291 kb on + strand, within PS417_03650 at 827.292 kb on - strand, within PS417_03650 at 827.292 kb on - strand, within PS417_03650 at 827.306 kb on + strand, within PS417_03650 at 827.306 kb on + strand, within PS417_03650 at 827.306 kb on + strand, within PS417_03650 at 827.307 kb on - strand, within PS417_03650 at 827.307 kb on - strand, within PS417_03650 at 827.411 kb on + strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.744 kb on + strand, within PS417_03650 at 827.744 kb on + strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.900 kb on + strand, within PS417_03650 at 827.901 kb on - strand, within PS417_03650 at 827.901 kb on - strand, within PS417_03650 at 828.173 kb on - strand, within PS417_03650 at 828.194 kb on + strand, within PS417_03650 at 828.216 kb on + strand, within PS417_03650 at 828.236 kb on + strand, within PS417_03650 at 828.243 kb on + strand, within PS417_03650 at 828.273 kb on + strand at 828.273 kb on + strand at 828.336 kb on - strand at 828.384 kb on + strand at 828.384 kb on + strand at 828.384 kb on + strand at 828.385 kb on - strand at 828.385 kb on - strand at 828.385 kb on - strand at 828.683 kb on - strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.815 kb on - strand, within PS417_03655 at 829.016 kb on - strand, within PS417_03655 at 829.218 kb on + strand, within PS417_03660 at 829.218 kb on + strand, within PS417_03660 at 829.219 kb on - strand, within PS417_03660 at 829.242 kb on + strand, within PS417_03660 at 829.243 kb on - strand, within PS417_03660 at 829.258 kb on - strand, within PS417_03660
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 826,198 + PS417_03640 0.88 +1.5 826,243 + -1.5 826,243 + -0.3 826,244 - +0.2 826,244 - +1.8 826,244 - +0.5 826,244 - -0.2 826,449 + PS417_03645 0.15 -1.2 826,449 + PS417_03645 0.15 -0.8 826,449 + PS417_03645 0.15 +0.5 826,450 - PS417_03645 0.15 -0.3 826,450 - +2.9 826,497 + PS417_03645 0.20 +1.6 826,498 - PS417_03645 0.21 -0.8 826,629 + PS417_03645 0.37 -0.8 826,729 - PS417_03645 0.49 -0.8 826,729 - PS417_03645 0.49 +0.4 826,806 + PS417_03645 0.59 -0.7 826,807 - PS417_03645 0.59 +0.4 826,826 - PS417_03645 0.61 -0.1 826,882 + PS417_03645 0.68 +0.8 826,883 - PS417_03645 0.68 +0.0 826,883 - PS417_03645 0.68 -0.2 826,959 + PS417_03645 0.78 -0.0 827,225 + +0.1 827,226 - -0.8 827,248 + +1.0 827,291 + PS417_03650 0.12 -1.9 827,291 + PS417_03650 0.12 -0.3 827,292 - PS417_03650 0.12 -1.8 827,292 - PS417_03650 0.12 +0.2 827,306 + PS417_03650 0.14 +1.1 827,306 + PS417_03650 0.14 +0.2 827,306 + PS417_03650 0.14 -1.8 827,307 - PS417_03650 0.14 -0.9 827,307 - PS417_03650 0.14 -0.4 827,411 + PS417_03650 0.22 -0.6 827,412 - PS417_03650 0.22 -0.4 827,412 - PS417_03650 0.22 -1.1 827,412 - PS417_03650 0.22 -0.7 827,412 - PS417_03650 0.22 -0.7 827,412 - PS417_03650 0.22 -0.3 827,744 + PS417_03650 0.49 -0.2 827,744 + PS417_03650 0.49 -1.0 827,745 - PS417_03650 0.49 +0.2 827,745 - PS417_03650 0.49 -0.1 827,745 - PS417_03650 0.49 -0.3 827,745 - PS417_03650 0.49 -0.6 827,745 - PS417_03650 0.49 -0.2 827,900 + PS417_03650 0.61 -0.0 827,901 - PS417_03650 0.61 -0.3 827,901 - PS417_03650 0.61 -0.9 828,173 - PS417_03650 0.83 -1.0 828,194 + PS417_03650 0.85 -1.9 828,216 + PS417_03650 0.86 +0.7 828,236 + PS417_03650 0.88 -0.3 828,243 + PS417_03650 0.89 -0.5 828,273 + -1.2 828,273 + -0.0 828,336 - +0.4 828,384 + -0.5 828,384 + -0.3 828,384 + -1.3 828,385 - -0.2 828,385 - -0.6 828,385 - +0.5 828,683 - PS417_03655 0.39 -2.0 828,709 + PS417_03655 0.42 +0.8 828,709 + PS417_03655 0.42 -0.6 828,709 + PS417_03655 0.42 -1.5 828,815 - PS417_03655 0.55 -0.5 829,016 - PS417_03655 0.81 +0.7 829,218 + PS417_03660 0.14 +0.2 829,218 + PS417_03660 0.14 -0.7 829,219 - PS417_03660 0.14 -0.1 829,242 + PS417_03660 0.19 +1.4 829,243 - PS417_03660 0.20 -0.7 829,258 - PS417_03660 0.23 +1.8
Or see this region's nucleotide sequence