Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26590 and PS417_26595 overlap by 4 nucleotides PS417_26595 and PS417_26600 overlap by 7 nucleotides PS417_26600 and PS417_26605 overlap by 4 nucleotides PS417_26605 and PS417_26610 overlap by 8 nucleotides
PS417_26590: PS417_26590 - malonate decarboxylase subunit epsilon, at 5,748,936 to 5,749,835
_26590
PS417_26595: PS417_26595 - phosphoribosyl-dephospho-CoA transferase, at 5,749,832 to 5,750,419
_26595
PS417_26600: PS417_26600 - malonate decarboxylase subunit gamma, at 5,750,413 to 5,751,183
_26600
PS417_26605: PS417_26605 - malonate decarboxylase subunit beta, at 5,751,180 to 5,752,022
_26605
PS417_26610: PS417_26610 - malonate decarboxylase subunit delta, at 5,752,015 to 5,752,314
_26610
Position (kb) 5750
5751
5752 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5749.619 kb on - strand, within PS417_26590 at 5749.669 kb on - strand, within PS417_26590 at 5749.967 kb on - strand, within PS417_26595 at 5750.613 kb on - strand, within PS417_26600 at 5750.924 kb on - strand, within PS417_26600 at 5751.071 kb on + strand, within PS417_26600 at 5751.072 kb on - strand, within PS417_26600 at 5751.072 kb on - strand, within PS417_26600 at 5751.094 kb on + strand, within PS417_26600 at 5751.095 kb on - strand, within PS417_26600 at 5751.199 kb on + strand at 5751.265 kb on + strand, within PS417_26605 at 5751.268 kb on + strand, within PS417_26605 at 5752.011 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,749,619 - PS417_26590 0.76 -0.5 5,749,669 - PS417_26590 0.81 -0.5 5,749,967 - PS417_26595 0.23 -1.0 5,750,613 - PS417_26600 0.26 -0.4 5,750,924 - PS417_26600 0.66 -0.6 5,751,071 + PS417_26600 0.85 +1.3 5,751,072 - PS417_26600 0.85 -0.2 5,751,072 - PS417_26600 0.85 -0.3 5,751,094 + PS417_26600 0.88 -0.4 5,751,095 - PS417_26600 0.88 +0.3 5,751,199 + +0.2 5,751,265 + PS417_26605 0.10 -2.8 5,751,268 + PS417_26605 0.10 -1.8 5,752,011 + -1.3
Or see this region's nucleotide sequence