Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02480 and PS417_02485 overlap by 1 nucleotides PS417_02485 and PS417_02490 are separated by 95 nucleotides PS417_02490 and PS417_02495 are separated by 12 nucleotides
PS417_02480: PS417_02480 - DNA mismatch repair protein, at 566,499 to 568,415
_02480
PS417_02485: PS417_02485 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 568,415 to 569,386
_02485
PS417_02490: PS417_02490 - RNA-binding protein Hfq, at 569,482 to 569,742
_02490
PS417_02495: PS417_02495 - GTPase HflX, at 569,755 to 571,056
_02495
Position (kb) 568
569
570 Strain fitness (log2 ratio) -2
-1
0
1 at 567.660 kb on + strand, within PS417_02480 at 567.661 kb on - strand, within PS417_02480 at 567.700 kb on - strand, within PS417_02480 at 567.705 kb on + strand, within PS417_02480 at 567.706 kb on - strand, within PS417_02480 at 567.830 kb on + strand, within PS417_02480 at 567.873 kb on + strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 568.171 kb on + strand, within PS417_02480 at 568.700 kb on - strand, within PS417_02485 at 568.731 kb on - strand, within PS417_02485 at 569.016 kb on - strand, within PS417_02485 at 569.018 kb on - strand, within PS417_02485 at 569.092 kb on + strand, within PS417_02485 at 569.093 kb on - strand, within PS417_02485 at 569.124 kb on + strand, within PS417_02485 at 569.179 kb on - strand, within PS417_02485 at 569.466 kb on + strand at 569.733 kb on + strand at 569.743 kb on + strand at 569.744 kb on - strand at 569.744 kb on - strand at 569.744 kb on - strand at 569.898 kb on - strand, within PS417_02495 at 570.028 kb on - strand, within PS417_02495 at 570.370 kb on + strand, within PS417_02495 at 570.373 kb on - strand, within PS417_02495
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 567,660 + PS417_02480 0.61 -0.4 567,661 - PS417_02480 0.61 +0.1 567,700 - PS417_02480 0.63 -1.4 567,705 + PS417_02480 0.63 -0.5 567,706 - PS417_02480 0.63 -0.7 567,830 + PS417_02480 0.69 +1.1 567,873 + PS417_02480 0.72 -0.3 567,874 - PS417_02480 0.72 -0.6 567,874 - PS417_02480 0.72 -0.4 568,171 + PS417_02480 0.87 -0.2 568,700 - PS417_02485 0.29 -0.6 568,731 - PS417_02485 0.33 +0.3 569,016 - PS417_02485 0.62 -0.4 569,018 - PS417_02485 0.62 +0.2 569,092 + PS417_02485 0.70 -1.4 569,093 - PS417_02485 0.70 -1.0 569,124 + PS417_02485 0.73 -2.0 569,179 - PS417_02485 0.79 +0.6 569,466 + +0.9 569,733 + +0.2 569,743 + -0.2 569,744 - +0.6 569,744 - -1.1 569,744 - -1.9 569,898 - PS417_02495 0.11 +1.2 570,028 - PS417_02495 0.21 +1.4 570,370 + PS417_02495 0.47 -0.7 570,373 - PS417_02495 0.47 +1.3
Or see this region's nucleotide sequence