Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23090 and PS417_23095 are separated by 10 nucleotides PS417_23095 and PS417_23100 are separated by 3 nucleotides PS417_23100 and PS417_23105 are separated by 103 nucleotides
PS417_23090: PS417_23090 - LysR family transcriptional regulator, at 5,005,336 to 5,006,226
_23090
PS417_23095: PS417_23095 - exodeoxyribonuclease, at 5,006,237 to 5,007,616
_23095
PS417_23100: PS417_23100 - peptidase M23, at 5,007,620 to 5,008,441
_23100
PS417_23105: PS417_23105 - hypothetical protein, at 5,008,545 to 5,008,772
_23105
Position (kb) 5006
5007
5008 Strain fitness (log2 ratio) -1
0
1
2
3 at 5005.241 kb on - strand at 5005.249 kb on - strand at 5005.252 kb on - strand at 5005.269 kb on + strand at 5005.270 kb on - strand at 5005.292 kb on + strand at 5005.292 kb on + strand at 5005.292 kb on + strand at 5005.361 kb on - strand at 5005.592 kb on + strand, within PS417_23090 at 5005.597 kb on - strand, within PS417_23090 at 5005.709 kb on - strand, within PS417_23090 at 5005.826 kb on + strand, within PS417_23090 at 5005.826 kb on + strand, within PS417_23090 at 5005.826 kb on + strand, within PS417_23090 at 5005.827 kb on - strand at 5005.828 kb on + strand, within PS417_23090 at 5005.828 kb on + strand, within PS417_23090 at 5005.829 kb on - strand, within PS417_23090 at 5005.830 kb on + strand, within PS417_23090 at 5005.960 kb on + strand, within PS417_23090 at 5005.961 kb on - strand, within PS417_23090 at 5006.223 kb on - strand at 5006.224 kb on + strand at 5006.242 kb on + strand at 5006.242 kb on + strand at 5006.243 kb on - strand at 5006.341 kb on + strand at 5006.342 kb on - strand at 5006.730 kb on + strand, within PS417_23095 at 5007.634 kb on + strand at 5007.635 kb on - strand at 5007.635 kb on - strand at 5007.664 kb on + strand at 5007.665 kb on - strand at 5007.683 kb on + strand at 5007.683 kb on + strand at 5007.683 kb on + strand at 5007.683 kb on + strand at 5007.683 kb on + strand at 5007.684 kb on - strand at 5007.684 kb on - strand at 5007.684 kb on - strand at 5007.863 kb on - strand, within PS417_23100 at 5007.863 kb on - strand, within PS417_23100 at 5007.903 kb on - strand, within PS417_23100 at 5008.013 kb on + strand, within PS417_23100 at 5008.211 kb on + strand, within PS417_23100 at 5008.211 kb on + strand, within PS417_23100 at 5008.212 kb on - strand, within PS417_23100 at 5008.212 kb on - strand, within PS417_23100 at 5008.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,005,241 - -0.2 5,005,249 - +0.4 5,005,252 - -0.8 5,005,269 + +3.3 5,005,270 - +0.3 5,005,292 + -0.0 5,005,292 + -0.7 5,005,292 + +0.7 5,005,361 - +1.0 5,005,592 + PS417_23090 0.29 -1.1 5,005,597 - PS417_23090 0.29 -0.3 5,005,709 - PS417_23090 0.42 +0.3 5,005,826 + PS417_23090 0.55 +0.6 5,005,826 + PS417_23090 0.55 +0.4 5,005,826 + PS417_23090 0.55 -1.0 5,005,827 - +1.4 5,005,828 + PS417_23090 0.55 +0.5 5,005,828 + PS417_23090 0.55 -0.2 5,005,829 - PS417_23090 0.55 -0.2 5,005,830 + PS417_23090 0.55 +2.1 5,005,960 + PS417_23090 0.70 +0.0 5,005,961 - PS417_23090 0.70 +0.6 5,006,223 - -0.3 5,006,224 + +0.6 5,006,242 + +0.2 5,006,242 + -1.0 5,006,243 - +0.7 5,006,341 + +0.5 5,006,342 - -0.4 5,006,730 + PS417_23095 0.36 -0.9 5,007,634 + -1.4 5,007,635 - -0.2 5,007,635 - +0.0 5,007,664 + -0.4 5,007,665 - -0.9 5,007,683 + +0.3 5,007,683 + -0.3 5,007,683 + +0.8 5,007,683 + -0.5 5,007,683 + -0.4 5,007,684 - +0.4 5,007,684 - +0.0 5,007,684 - +0.5 5,007,863 - PS417_23100 0.30 -0.6 5,007,863 - PS417_23100 0.30 -0.9 5,007,903 - PS417_23100 0.34 -0.5 5,008,013 + PS417_23100 0.48 +0.1 5,008,211 + PS417_23100 0.72 -1.1 5,008,211 + PS417_23100 0.72 +0.2 5,008,212 - PS417_23100 0.72 +0.7 5,008,212 - PS417_23100 0.72 -0.3 5,008,369 + -0.5
Or see this region's nucleotide sequence