Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02265 and PS417_02270 are separated by 675 nucleotides PS417_02270 and PS417_02275 are separated by 0 nucleotides PS417_02275 and PS417_02280 overlap by 4 nucleotides
PS417_02265: PS417_02265 - TonB-dependent receptor, at 515,415 to 517,499
_02265
PS417_02270: PS417_02270 - carbamoyltransferase, at 518,175 to 519,932
_02270
PS417_02275: PS417_02275 - acetyltransferase, at 519,933 to 520,829
_02275
PS417_02280: PS417_02280 - GlcNAc-PI de-N-acetylase, at 520,826 to 522,226
_02280
Position (kb) 518
519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 517.246 kb on + strand, within PS417_02265 at 517.247 kb on - strand, within PS417_02265 at 517.247 kb on - strand, within PS417_02265 at 517.464 kb on + strand at 517.532 kb on + strand at 517.533 kb on - strand at 517.631 kb on - strand at 517.633 kb on + strand at 517.633 kb on + strand at 517.672 kb on + strand at 517.689 kb on + strand at 517.689 kb on + strand at 517.705 kb on + strand at 517.706 kb on - strand at 517.714 kb on + strand at 517.715 kb on - strand at 517.746 kb on + strand at 517.746 kb on + strand at 517.747 kb on - strand at 517.994 kb on + strand at 517.995 kb on - strand at 518.027 kb on - strand at 518.079 kb on - strand at 518.147 kb on + strand at 518.147 kb on + strand at 518.156 kb on + strand at 518.156 kb on + strand at 518.235 kb on + strand at 518.721 kb on + strand, within PS417_02270 at 518.721 kb on + strand, within PS417_02270 at 518.922 kb on + strand, within PS417_02270 at 519.012 kb on + strand, within PS417_02270 at 519.012 kb on + strand, within PS417_02270 at 519.012 kb on + strand, within PS417_02270 at 519.240 kb on + strand, within PS417_02270 at 519.732 kb on + strand, within PS417_02270 at 520.642 kb on - strand, within PS417_02275 at 520.825 kb on + strand at 520.825 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 517,246 + PS417_02265 0.88 +0.6 517,247 - PS417_02265 0.88 -0.5 517,247 - PS417_02265 0.88 +0.1 517,464 + +2.1 517,532 + +0.4 517,533 - -0.0 517,631 - +1.3 517,633 + -0.9 517,633 + +2.2 517,672 + -0.3 517,689 + +0.2 517,689 + +0.5 517,705 + -0.3 517,706 - -0.5 517,714 + +0.4 517,715 - -0.5 517,746 + -0.5 517,746 + +1.5 517,747 - +0.2 517,994 + +0.7 517,995 - -3.7 518,027 - +2.6 518,079 - +2.4 518,147 + -0.3 518,147 + -0.1 518,156 + +0.0 518,156 + -0.3 518,235 + -0.1 518,721 + PS417_02270 0.31 +0.0 518,721 + PS417_02270 0.31 -2.8 518,922 + PS417_02270 0.42 -0.9 519,012 + PS417_02270 0.48 -1.5 519,012 + PS417_02270 0.48 -1.2 519,012 + PS417_02270 0.48 -0.9 519,240 + PS417_02270 0.61 -0.1 519,732 + PS417_02270 0.89 +1.0 520,642 - PS417_02275 0.79 +3.4 520,825 + +0.4 520,825 + +3.4
Or see this region's nucleotide sequence