Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21870 and PS417_21875 are separated by 0 nucleotides PS417_21875 and PS417_21880 overlap by 9 nucleotides PS417_21880 and PS417_21885 are separated by 155 nucleotides PS417_21885 and PS417_21890 are separated by 389 nucleotides
PS417_21870: PS417_21870 - glycerophosphodiester phosphodiesterase, at 4,746,983 to 4,748,110
_21870
PS417_21875: PS417_21875 - AraC family transcriptional regulator, at 4,748,111 to 4,748,764
_21875
PS417_21880: PS417_21880 - fatty acid hydroxylase, at 4,748,756 to 4,749,619
_21880
PS417_21885: PS417_21885 - peptidase M4, at 4,749,775 to 4,750,083
_21885
PS417_21890: PS417_21890 - magnesium transporter CorA, at 4,750,473 to 4,751,495
_21890
Position (kb) 4748
4749
4750 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4747.962 kb on - strand, within PS417_21870 at 4748.100 kb on - strand at 4748.101 kb on + strand at 4748.101 kb on + strand at 4748.101 kb on + strand at 4748.101 kb on + strand at 4748.102 kb on - strand at 4748.102 kb on - strand at 4748.102 kb on - strand at 4748.105 kb on + strand at 4748.105 kb on + strand at 4748.106 kb on - strand at 4748.285 kb on - strand, within PS417_21875 at 4748.342 kb on + strand, within PS417_21875 at 4748.366 kb on - strand, within PS417_21875 at 4748.763 kb on - strand at 4748.763 kb on - strand at 4748.763 kb on - strand at 4748.901 kb on + strand, within PS417_21880 at 4748.973 kb on + strand, within PS417_21880 at 4749.119 kb on + strand, within PS417_21880 at 4749.119 kb on + strand, within PS417_21880 at 4749.119 kb on + strand, within PS417_21880 at 4749.264 kb on + strand, within PS417_21880 at 4749.277 kb on + strand, within PS417_21880 at 4749.277 kb on + strand, within PS417_21880 at 4749.301 kb on + strand, within PS417_21880 at 4749.705 kb on + strand at 4749.706 kb on - strand at 4749.745 kb on + strand at 4749.745 kb on + strand at 4749.768 kb on - strand at 4749.980 kb on + strand, within PS417_21885 at 4750.202 kb on - strand at 4750.205 kb on + strand at 4750.206 kb on - strand at 4750.226 kb on + strand at 4750.280 kb on + strand at 4750.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,747,962 - PS417_21870 0.87 +1.5 4,748,100 - -2.4 4,748,101 + -1.3 4,748,101 + -0.3 4,748,101 + +1.5 4,748,101 + -0.0 4,748,102 - -0.4 4,748,102 - +2.4 4,748,102 - -0.1 4,748,105 + +0.9 4,748,105 + -0.4 4,748,106 - -0.0 4,748,285 - PS417_21875 0.27 -0.8 4,748,342 + PS417_21875 0.35 -1.1 4,748,366 - PS417_21875 0.39 -1.0 4,748,763 - +0.4 4,748,763 - -0.9 4,748,763 - +0.7 4,748,901 + PS417_21880 0.17 +0.5 4,748,973 + PS417_21880 0.25 +0.3 4,749,119 + PS417_21880 0.42 -0.9 4,749,119 + PS417_21880 0.42 -0.2 4,749,119 + PS417_21880 0.42 -0.1 4,749,264 + PS417_21880 0.59 -0.8 4,749,277 + PS417_21880 0.60 -0.3 4,749,277 + PS417_21880 0.60 +1.3 4,749,301 + PS417_21880 0.63 +0.0 4,749,705 + -1.6 4,749,706 - +0.8 4,749,745 + -1.0 4,749,745 + -2.0 4,749,768 - -0.4 4,749,980 + PS417_21885 0.66 +1.0 4,750,202 - -0.5 4,750,205 + -0.6 4,750,206 - +0.1 4,750,226 + -0.7 4,750,280 + +0.2 4,750,377 + +0.3
Or see this region's nucleotide sequence