Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01805 and PS417_01810 are separated by 162 nucleotides PS417_01810 and PS417_01815 overlap by 8 nucleotides PS417_01815 and PS417_01820 are separated by 16 nucleotides
PS417_01805: PS417_01805 - amino acid ABC transporter substrate-binding protein, at 403,052 to 403,849
_01805
PS417_01810: PS417_01810 - ABC transporter permease, at 404,012 to 404,971
_01810
PS417_01815: PS417_01815 - peptide ABC transporter ATP-binding protein, at 404,964 to 405,698
_01815
PS417_01820: PS417_01820 - chemotaxis protein, at 405,715 to 407,622
_01820
Position (kb) 404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 403.025 kb on + strand at 403.025 kb on + strand at 403.026 kb on - strand at 403.026 kb on - strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.028 kb on - strand at 403.178 kb on + strand, within PS417_01805 at 403.179 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.551 kb on - strand at 403.551 kb on - strand, within PS417_01805 at 403.590 kb on + strand, within PS417_01805 at 403.591 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.638 kb on + strand, within PS417_01805 at 403.639 kb on - strand, within PS417_01805 at 403.677 kb on - strand, within PS417_01805 at 403.734 kb on - strand, within PS417_01805 at 403.790 kb on + strand at 404.087 kb on + strand at 404.087 kb on + strand at 404.088 kb on - strand at 404.088 kb on - strand at 404.091 kb on - strand at 404.091 kb on - strand at 404.112 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.509 kb on + strand, within PS417_01810 at 404.510 kb on - strand, within PS417_01810 at 404.517 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.774 kb on - strand, within PS417_01810 at 404.775 kb on + strand, within PS417_01810 at 404.776 kb on - strand, within PS417_01810 at 404.900 kb on + strand at 404.900 kb on + strand at 404.987 kb on - strand at 404.987 kb on - strand at 405.249 kb on - strand, within PS417_01815 at 405.249 kb on - strand, within PS417_01815 at 405.697 kb on - strand at 405.838 kb on + strand at 405.838 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 403,025 + -0.0 403,025 + +0.0 403,026 - -0.5 403,026 - +1.1 403,027 + +0.8 403,027 + -0.6 403,027 + -1.0 403,027 + +1.3 403,028 - +0.9 403,178 + PS417_01805 0.16 -0.2 403,179 - PS417_01805 0.16 +0.5 403,458 - PS417_01805 0.51 -2.8 403,458 - PS417_01805 0.51 -0.2 403,458 - PS417_01805 0.51 +0.3 403,458 - PS417_01805 0.51 +0.3 403,458 - PS417_01805 0.51 +0.4 403,458 - PS417_01805 0.51 +0.1 403,460 - PS417_01805 0.51 -0.3 403,460 - PS417_01805 0.51 +0.1 403,460 - PS417_01805 0.51 +0.9 403,460 - PS417_01805 0.51 -0.2 403,550 + PS417_01805 0.62 -0.4 403,550 + PS417_01805 0.62 -0.0 403,551 - -0.3 403,551 - PS417_01805 0.63 -0.6 403,590 + PS417_01805 0.67 -0.0 403,591 - PS417_01805 0.68 -1.3 403,632 - PS417_01805 0.73 +0.6 403,632 - PS417_01805 0.73 +0.1 403,632 - PS417_01805 0.73 -1.3 403,638 + PS417_01805 0.73 -2.5 403,639 - PS417_01805 0.74 +0.1 403,677 - PS417_01805 0.78 -0.4 403,734 - PS417_01805 0.85 -0.5 403,790 + -0.7 404,087 + -1.2 404,087 + +0.0 404,088 - -0.3 404,088 - -0.1 404,091 - +0.1 404,091 - +0.6 404,112 - PS417_01810 0.10 +0.7 404,142 - PS417_01810 0.14 -0.5 404,142 - PS417_01810 0.14 -0.6 404,509 + PS417_01810 0.52 +0.5 404,510 - PS417_01810 0.52 +3.6 404,517 + PS417_01810 0.53 -1.0 404,618 + PS417_01810 0.63 -0.4 404,618 + PS417_01810 0.63 -0.3 404,618 + PS417_01810 0.63 -0.7 404,618 + PS417_01810 0.63 +0.7 404,619 - PS417_01810 0.63 -0.0 404,619 - PS417_01810 0.63 +0.6 404,773 + PS417_01810 0.79 +0.1 404,773 + PS417_01810 0.79 +1.0 404,774 - PS417_01810 0.79 -0.8 404,775 + PS417_01810 0.79 +4.1 404,776 - PS417_01810 0.80 -1.6 404,900 + -0.8 404,900 + +1.1 404,987 - +0.2 404,987 - +0.3 405,249 - PS417_01815 0.39 -0.6 405,249 - PS417_01815 0.39 +0.1 405,697 - -0.9 405,838 + -0.3 405,838 + -0.2
Or see this region's nucleotide sequence