Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01440 and PS417_01445 are separated by 289 nucleotides PS417_01445 and PS417_01450 overlap by 4 nucleotides
PS417_01440: PS417_01440 - hypothetical protein, at 320,468 to 321,907
_01440
PS417_01445: PS417_01445 - hypothetical protein, at 322,197 to 322,472
_01445
PS417_01450: PS417_01450 - integrase, at 322,469 to 323,449
_01450
Position (kb) 322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 321.503 kb on + strand, within PS417_01440 at 321.546 kb on - strand, within PS417_01440 at 321.687 kb on + strand, within PS417_01440 at 321.688 kb on - strand, within PS417_01440 at 321.737 kb on - strand, within PS417_01440 at 321.793 kb on - strand at 321.872 kb on - strand at 321.930 kb on - strand at 321.930 kb on - strand at 321.947 kb on - strand at 322.000 kb on + strand at 322.003 kb on + strand at 322.004 kb on - strand at 322.004 kb on - strand at 322.258 kb on + strand, within PS417_01445 at 322.258 kb on + strand, within PS417_01445 at 322.258 kb on + strand, within PS417_01445 at 322.258 kb on + strand, within PS417_01445 at 322.259 kb on - strand, within PS417_01445 at 322.259 kb on - strand, within PS417_01445 at 322.262 kb on - strand, within PS417_01445 at 322.264 kb on + strand, within PS417_01445 at 322.265 kb on - strand, within PS417_01445 at 322.265 kb on - strand, within PS417_01445 at 322.265 kb on - strand, within PS417_01445 at 322.344 kb on - strand, within PS417_01445 at 322.347 kb on + strand, within PS417_01445 at 322.347 kb on + strand, within PS417_01445 at 322.395 kb on + strand, within PS417_01445 at 322.395 kb on + strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.488 kb on + strand at 322.488 kb on + strand at 322.552 kb on + strand at 322.552 kb on + strand at 322.552 kb on + strand at 322.553 kb on - strand at 322.553 kb on - strand at 322.638 kb on + strand, within PS417_01450 at 322.639 kb on - strand, within PS417_01450 at 322.639 kb on - strand, within PS417_01450 at 322.639 kb on - strand, within PS417_01450 at 322.678 kb on + strand, within PS417_01450 at 322.760 kb on - strand, within PS417_01450 at 322.804 kb on + strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.916 kb on + strand, within PS417_01450 at 322.916 kb on + strand, within PS417_01450 at 322.917 kb on - strand, within PS417_01450 at 322.917 kb on - strand, within PS417_01450 at 323.016 kb on - strand, within PS417_01450 at 323.016 kb on - strand, within PS417_01450 at 323.118 kb on + strand, within PS417_01450 at 323.119 kb on - strand, within PS417_01450 at 323.119 kb on - strand, within PS417_01450 at 323.159 kb on - strand, within PS417_01450 at 323.217 kb on - strand, within PS417_01450 at 323.217 kb on - strand, within PS417_01450 at 323.217 kb on - strand, within PS417_01450 at 323.230 kb on - strand, within PS417_01450 at 323.230 kb on - strand, within PS417_01450 at 323.363 kb on + strand at 323.364 kb on - strand at 323.364 kb on - strand at 323.364 kb on - strand at 323.480 kb on - strand at 323.584 kb on - strand at 323.584 kb on - strand at 323.850 kb on + strand at 323.850 kb on + strand at 323.943 kb on - strand at 323.974 kb on + strand at 323.974 kb on + strand at 324.101 kb on + strand at 324.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 321,503 + PS417_01440 0.72 -0.6 321,546 - PS417_01440 0.75 +0.2 321,687 + PS417_01440 0.85 -3.7 321,688 - PS417_01440 0.85 +0.9 321,737 - PS417_01440 0.88 +0.2 321,793 - +1.3 321,872 - -0.5 321,930 - +0.5 321,930 - -0.3 321,947 - -2.2 322,000 + +0.9 322,003 + +0.7 322,004 - -0.4 322,004 - +0.0 322,258 + PS417_01445 0.22 -2.0 322,258 + PS417_01445 0.22 -0.5 322,258 + PS417_01445 0.22 +0.2 322,258 + PS417_01445 0.22 +0.4 322,259 - PS417_01445 0.22 -0.2 322,259 - PS417_01445 0.22 -0.1 322,262 - PS417_01445 0.24 -0.4 322,264 + PS417_01445 0.24 -0.1 322,265 - PS417_01445 0.25 -0.4 322,265 - PS417_01445 0.25 -0.3 322,265 - PS417_01445 0.25 -0.4 322,344 - PS417_01445 0.53 -0.5 322,347 + PS417_01445 0.54 +0.2 322,347 + PS417_01445 0.54 -0.8 322,395 + PS417_01445 0.72 +0.3 322,395 + PS417_01445 0.72 +0.3 322,396 - PS417_01445 0.72 -0.3 322,396 - PS417_01445 0.72 +0.2 322,396 - PS417_01445 0.72 -0.2 322,396 - PS417_01445 0.72 -0.7 322,488 + +0.4 322,488 + +0.7 322,552 + -0.5 322,552 + -2.1 322,552 + -0.1 322,553 - -0.9 322,553 - +0.3 322,638 + PS417_01450 0.17 +0.2 322,639 - PS417_01450 0.17 +0.8 322,639 - PS417_01450 0.17 -0.4 322,639 - PS417_01450 0.17 +0.2 322,678 + PS417_01450 0.21 -0.4 322,760 - PS417_01450 0.30 +0.3 322,804 + PS417_01450 0.34 -0.2 322,805 - PS417_01450 0.34 +1.4 322,805 - PS417_01450 0.34 +7.8 322,805 - PS417_01450 0.34 -0.1 322,805 - PS417_01450 0.34 -0.3 322,916 + PS417_01450 0.46 +0.3 322,916 + PS417_01450 0.46 +0.4 322,917 - PS417_01450 0.46 +0.2 322,917 - PS417_01450 0.46 -0.9 323,016 - PS417_01450 0.56 +0.8 323,016 - PS417_01450 0.56 -1.1 323,118 + PS417_01450 0.66 +0.5 323,119 - PS417_01450 0.66 -0.4 323,119 - PS417_01450 0.66 +0.6 323,159 - PS417_01450 0.70 -1.0 323,217 - PS417_01450 0.76 -0.4 323,217 - PS417_01450 0.76 +1.0 323,217 - PS417_01450 0.76 +1.6 323,230 - PS417_01450 0.78 -0.3 323,230 - PS417_01450 0.78 +3.7 323,363 + +1.1 323,364 - -1.6 323,364 - -1.6 323,364 - +0.7 323,480 - -0.4 323,584 - -1.4 323,584 - +0.2 323,850 + +0.7 323,850 + -0.5 323,943 - +0.9 323,974 + +0.1 323,974 + +1.1 324,101 + +0.3 324,146 - -0.6
Or see this region's nucleotide sequence