Strain Fitness in Pseudomonas simiae WCS417 around PS417_05270

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05260 and PS417_05265 are separated by 10 nucleotidesPS417_05265 and PS417_05270 are separated by 42 nucleotidesPS417_05270 and PS417_05275 are separated by 13 nucleotidesPS417_05275 and PS417_05285 are separated by 87 nucleotides PS417_05260: PS417_05260 - MFS transporter, at 1,167,218 to 1,168,558 _05260 PS417_05265: PS417_05265 - short-chain dehydrogenase, at 1,168,569 to 1,169,330 _05265 PS417_05270: PS417_05270 - 3-oxoacyl-ACP reductase, at 1,169,373 to 1,170,122 _05270 PS417_05275: PS417_05275 - hypothetical protein, at 1,170,136 to 1,170,429 _05275 PS417_05285: PS417_05285 - cobalamin biosynthesis protein CobW, at 1,170,517 to 1,171,491 _05285 Position (kb) 1169 1170 1171Strain fitness (log2 ratio) -2 -1 0 1 2at 1168.557 kb on - strandat 1168.636 kb on - strandat 1168.668 kb on + strand, within PS417_05265at 1168.672 kb on - strand, within PS417_05265at 1169.001 kb on + strand, within PS417_05265at 1169.370 kb on + strandat 1169.371 kb on - strandat 1169.803 kb on + strand, within PS417_05270at 1169.803 kb on + strand, within PS417_05270at 1169.803 kb on + strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.807 kb on + strand, within PS417_05270at 1169.807 kb on + strand, within PS417_05270at 1169.808 kb on - strand, within PS417_05270at 1169.808 kb on - strand, within PS417_05270at 1170.131 kb on + strandat 1170.132 kb on - strandat 1170.428 kb on - strandat 1170.428 kb on - strandat 1170.489 kb on + strandat 1170.656 kb on + strand, within PS417_05285at 1170.656 kb on + strand, within PS417_05285at 1170.656 kb on + strand, within PS417_05285at 1170.657 kb on - strand, within PS417_05285at 1170.687 kb on - strand, within PS417_05285at 1170.687 kb on - strand, within PS417_05285

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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1,168,557 - -0.5
1,168,636 - +0.1
1,168,668 + PS417_05265 0.13 -0.2
1,168,672 - PS417_05265 0.14 -1.2
1,169,001 + PS417_05265 0.57 +0.9
1,169,370 + -2.3
1,169,371 - -0.3
1,169,803 + PS417_05270 0.57 -1.2
1,169,803 + PS417_05270 0.57 -1.1
1,169,803 + PS417_05270 0.57 +0.1
1,169,804 - PS417_05270 0.57 +0.4
1,169,804 - PS417_05270 0.57 -1.8
1,169,804 - PS417_05270 0.57 -1.1
1,169,804 - PS417_05270 0.57 -0.8
1,169,804 - PS417_05270 0.57 -0.7
1,169,807 + PS417_05270 0.58 -1.1
1,169,807 + PS417_05270 0.58 -0.5
1,169,808 - PS417_05270 0.58 -0.1
1,169,808 - PS417_05270 0.58 +1.1
1,170,131 + -0.8
1,170,132 - -0.1
1,170,428 - -1.3
1,170,428 - -1.1
1,170,489 + +0.1
1,170,656 + PS417_05285 0.14 -1.3
1,170,656 + PS417_05285 0.14 -0.7
1,170,656 + PS417_05285 0.14 +0.0
1,170,657 - PS417_05285 0.14 +0.8
1,170,687 - PS417_05285 0.17 +2.5
1,170,687 - PS417_05285 0.17 -1.7

Or see this region's nucleotide sequence