Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03325 and PS417_03330 are separated by 261 nucleotides PS417_03330 and PS417_03335 are separated by 185 nucleotides
PS417_03325: PS417_03325 - acid phosphatase, at 760,842 to 762,542
_03325
PS417_03330: PS417_03330 - Short chain fatty acid transporter, at 762,804 to 764,222
_03330
PS417_03335: PS417_03335 - MFS transporter, at 764,408 to 765,697
_03335
Position (kb) 762
763
764
765 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 761.821 kb on + strand, within PS417_03325 at 761.821 kb on + strand, within PS417_03325 at 761.822 kb on - strand, within PS417_03325 at 761.822 kb on - strand, within PS417_03325 at 762.013 kb on + strand, within PS417_03325 at 762.086 kb on - strand, within PS417_03325 at 762.113 kb on - strand, within PS417_03325 at 762.510 kb on + strand at 762.634 kb on + strand at 762.656 kb on + strand at 762.727 kb on - strand at 762.727 kb on - strand at 762.852 kb on + strand at 762.955 kb on + strand, within PS417_03330 at 762.956 kb on - strand, within PS417_03330 at 762.956 kb on - strand, within PS417_03330 at 762.956 kb on - strand, within PS417_03330 at 762.956 kb on - strand, within PS417_03330 at 762.997 kb on + strand, within PS417_03330 at 763.025 kb on - strand, within PS417_03330 at 763.054 kb on + strand, within PS417_03330 at 763.055 kb on - strand, within PS417_03330 at 763.055 kb on - strand, within PS417_03330 at 763.117 kb on + strand, within PS417_03330 at 763.138 kb on + strand, within PS417_03330 at 763.138 kb on + strand, within PS417_03330 at 763.138 kb on + strand, within PS417_03330 at 763.138 kb on + strand, within PS417_03330 at 763.138 kb on + strand, within PS417_03330 at 763.139 kb on - strand, within PS417_03330 at 763.139 kb on - strand, within PS417_03330 at 763.178 kb on + strand, within PS417_03330 at 763.179 kb on - strand, within PS417_03330 at 763.179 kb on - strand, within PS417_03330 at 763.179 kb on - strand, within PS417_03330 at 763.768 kb on + strand, within PS417_03330 at 763.769 kb on - strand, within PS417_03330 at 763.987 kb on + strand, within PS417_03330 at 764.236 kb on + strand at 764.236 kb on + strand at 764.236 kb on + strand at 764.237 kb on - strand at 764.237 kb on - strand at 764.237 kb on - strand at 764.238 kb on + strand at 764.238 kb on + strand at 764.238 kb on + strand at 764.238 kb on + strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.245 kb on + strand at 764.257 kb on + strand at 764.332 kb on + strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.335 kb on - strand at 764.335 kb on - strand at 764.744 kb on + strand, within PS417_03335 at 764.744 kb on + strand, within PS417_03335 at 764.916 kb on - strand, within PS417_03335 at 764.981 kb on + strand, within PS417_03335 at 764.982 kb on - strand, within PS417_03335
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 761,821 + PS417_03325 0.58 +0.8 761,821 + PS417_03325 0.58 -0.1 761,822 - PS417_03325 0.58 -0.5 761,822 - PS417_03325 0.58 +1.1 762,013 + PS417_03325 0.69 +0.6 762,086 - PS417_03325 0.73 -0.3 762,113 - PS417_03325 0.75 +0.5 762,510 + +0.5 762,634 + -0.6 762,656 + +1.5 762,727 - -1.0 762,727 - +0.7 762,852 + -0.4 762,955 + PS417_03330 0.11 +0.1 762,956 - PS417_03330 0.11 +0.0 762,956 - PS417_03330 0.11 -1.3 762,956 - PS417_03330 0.11 -0.8 762,956 - PS417_03330 0.11 -0.0 762,997 + PS417_03330 0.14 +0.5 763,025 - PS417_03330 0.16 -0.3 763,054 + PS417_03330 0.18 +0.4 763,055 - PS417_03330 0.18 +0.6 763,055 - PS417_03330 0.18 -1.0 763,117 + PS417_03330 0.22 +2.0 763,138 + PS417_03330 0.24 -0.4 763,138 + PS417_03330 0.24 -1.3 763,138 + PS417_03330 0.24 +3.3 763,138 + PS417_03330 0.24 +1.3 763,138 + PS417_03330 0.24 +0.5 763,139 - PS417_03330 0.24 +0.3 763,139 - PS417_03330 0.24 -0.4 763,178 + PS417_03330 0.26 -0.6 763,179 - PS417_03330 0.26 -0.5 763,179 - PS417_03330 0.26 +4.6 763,179 - PS417_03330 0.26 -0.4 763,768 + PS417_03330 0.68 -0.3 763,769 - PS417_03330 0.68 +0.4 763,987 + PS417_03330 0.83 +0.7 764,236 + +0.0 764,236 + -0.1 764,236 + -0.1 764,237 - -0.4 764,237 - -0.2 764,237 - -0.6 764,238 + -1.6 764,238 + +4.5 764,238 + -0.6 764,238 + +1.7 764,239 - +0.4 764,239 - +0.6 764,239 - -0.3 764,239 - +0.3 764,239 - +0.4 764,239 - -0.6 764,239 - +0.5 764,239 - -1.1 764,239 - +0.7 764,243 - -2.1 764,243 - +0.1 764,243 - +1.5 764,243 - -0.7 764,243 - -1.1 764,243 - -1.1 764,243 - +0.1 764,245 + +0.4 764,257 + +0.5 764,332 + +0.4 764,333 - +0.5 764,333 - +0.5 764,333 - +0.6 764,335 - -0.7 764,335 - +0.6 764,744 + PS417_03335 0.26 -0.3 764,744 + PS417_03335 0.26 -0.5 764,916 - PS417_03335 0.39 -0.9 764,981 + PS417_03335 0.44 -0.2 764,982 - PS417_03335 0.44 -0.7
Or see this region's nucleotide sequence