Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27465 and PS417_27470 are separated by 270 nucleotides PS417_27470 and PS417_27475 are separated by 88 nucleotides PS417_27475 and PS417_27480 overlap by 1 nucleotides
PS417_27465: PS417_27465 - cystathionine gamma-synthase, at 5,926,940 to 5,928,835
_27465
PS417_27470: PS417_27470 - threonine transporter RhtB, at 5,929,106 to 5,929,738
_27470
PS417_27475: PS417_27475 - membrane protein, at 5,929,827 to 5,930,399
_27475
PS417_27480: PS417_27480 - ABC transporter ATP-binding protein, at 5,930,399 to 5,932,309
_27480
Position (kb) 5929
5930
5931 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5928.856 kb on + strand at 5928.863 kb on + strand at 5928.863 kb on + strand at 5928.902 kb on + strand at 5928.902 kb on + strand at 5928.934 kb on - strand at 5929.108 kb on - strand at 5929.196 kb on - strand, within PS417_27470 at 5929.238 kb on - strand, within PS417_27470 at 5929.238 kb on - strand, within PS417_27470 at 5929.293 kb on + strand, within PS417_27470 at 5929.337 kb on + strand, within PS417_27470 at 5929.485 kb on + strand, within PS417_27470 at 5929.486 kb on - strand, within PS417_27470 at 5929.521 kb on + strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.620 kb on + strand, within PS417_27470 at 5929.639 kb on - strand, within PS417_27470 at 5929.726 kb on + strand at 5929.778 kb on + strand at 5929.779 kb on - strand at 5929.805 kb on - strand at 5929.813 kb on - strand at 5929.853 kb on + strand at 5929.955 kb on - strand, within PS417_27475 at 5930.311 kb on + strand, within PS417_27475 at 5930.484 kb on - strand at 5930.871 kb on - strand, within PS417_27480 at 5931.175 kb on - strand, within PS417_27480 at 5931.175 kb on - strand, within PS417_27480 at 5931.187 kb on + strand, within PS417_27480
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,928,856 + +0.0 5,928,863 + -0.7 5,928,863 + -0.2 5,928,902 + -2.1 5,928,902 + -0.1 5,928,934 - +0.7 5,929,108 - +0.2 5,929,196 - PS417_27470 0.14 -0.9 5,929,238 - PS417_27470 0.21 +0.1 5,929,238 - PS417_27470 0.21 -1.5 5,929,293 + PS417_27470 0.30 -0.6 5,929,337 + PS417_27470 0.36 -0.7 5,929,485 + PS417_27470 0.60 -0.5 5,929,486 - PS417_27470 0.60 +0.3 5,929,521 + PS417_27470 0.66 +0.1 5,929,522 - PS417_27470 0.66 -1.1 5,929,522 - PS417_27470 0.66 +0.5 5,929,522 - PS417_27470 0.66 +0.6 5,929,522 - PS417_27470 0.66 -1.1 5,929,620 + PS417_27470 0.81 +0.2 5,929,639 - PS417_27470 0.84 -1.1 5,929,726 + +0.4 5,929,778 + -2.0 5,929,779 - -1.0 5,929,805 - +0.6 5,929,813 - -0.1 5,929,853 + -1.7 5,929,955 - PS417_27475 0.22 -0.4 5,930,311 + PS417_27475 0.84 -1.7 5,930,484 - -0.1 5,930,871 - PS417_27480 0.25 +1.1 5,931,175 - PS417_27480 0.41 -1.2 5,931,175 - PS417_27480 0.41 -0.7 5,931,187 + PS417_27480 0.41 +2.4
Or see this region's nucleotide sequence