Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24190 and PS417_24195 are separated by 157 nucleotides PS417_24195 and PS417_24200 are separated by 144 nucleotides PS417_24200 and PS417_24205 are separated by 167 nucleotides
PS417_24190: PS417_24190 - AraC family transcriptional regulator, at 5,247,189 to 5,248,043
_24190
PS417_24195: PS417_24195 - GNAT family acetyltransferase, at 5,248,201 to 5,248,749
_24195
PS417_24200: PS417_24200 - GCN5 family acetyltransferase, at 5,248,894 to 5,249,331
_24200
PS417_24205: PS417_24205 - hypothetical protein, at 5,249,499 to 5,250,524
_24205
Position (kb) 5248
5249
5250 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 5247.940 kb on + strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5248.043 kb on + strand at 5248.044 kb on - strand at 5248.057 kb on + strand at 5248.058 kb on - strand at 5248.069 kb on + strand at 5248.070 kb on - strand at 5248.112 kb on + strand at 5248.140 kb on - strand at 5248.161 kb on - strand at 5248.161 kb on - strand at 5248.166 kb on - strand at 5248.200 kb on + strand at 5248.209 kb on + strand at 5248.210 kb on - strand at 5248.262 kb on + strand, within PS417_24195 at 5248.263 kb on - strand, within PS417_24195 at 5248.264 kb on + strand, within PS417_24195 at 5248.264 kb on + strand, within PS417_24195 at 5248.265 kb on - strand, within PS417_24195 at 5248.270 kb on + strand, within PS417_24195 at 5248.270 kb on + strand, within PS417_24195 at 5248.270 kb on + strand, within PS417_24195 at 5248.375 kb on + strand, within PS417_24195 at 5248.375 kb on + strand, within PS417_24195 at 5248.375 kb on + strand, within PS417_24195 at 5248.376 kb on - strand, within PS417_24195 at 5248.376 kb on - strand, within PS417_24195 at 5248.376 kb on - strand, within PS417_24195 at 5248.376 kb on - strand, within PS417_24195 at 5248.376 kb on - strand, within PS417_24195 at 5248.376 kb on - strand, within PS417_24195 at 5248.431 kb on - strand, within PS417_24195 at 5248.476 kb on - strand, within PS417_24195 at 5248.476 kb on - strand, within PS417_24195 at 5248.476 kb on - strand, within PS417_24195 at 5248.588 kb on + strand, within PS417_24195 at 5248.667 kb on - strand, within PS417_24195 at 5248.667 kb on - strand, within PS417_24195 at 5248.747 kb on + strand at 5248.779 kb on + strand at 5248.780 kb on - strand at 5248.780 kb on - strand at 5248.802 kb on - strand at 5248.815 kb on - strand at 5248.815 kb on - strand at 5248.838 kb on + strand at 5248.975 kb on + strand at 5248.984 kb on - strand, within PS417_24200 at 5248.987 kb on - strand, within PS417_24200 at 5248.990 kb on - strand, within PS417_24200 at 5248.990 kb on - strand, within PS417_24200 at 5248.990 kb on - strand, within PS417_24200 at 5249.064 kb on - strand, within PS417_24200 at 5249.118 kb on + strand, within PS417_24200 at 5249.119 kb on - strand, within PS417_24200 at 5249.187 kb on - strand, within PS417_24200 at 5249.224 kb on + strand, within PS417_24200 at 5249.307 kb on + strand at 5249.307 kb on + strand at 5249.377 kb on - strand at 5249.409 kb on - strand at 5249.409 kb on - strand at 5249.409 kb on - strand at 5249.603 kb on + strand, within PS417_24205 at 5249.643 kb on + strand, within PS417_24205 at 5249.643 kb on + strand, within PS417_24205 at 5249.647 kb on - strand, within PS417_24205 at 5249.649 kb on + strand, within PS417_24205 at 5249.649 kb on + strand, within PS417_24205 at 5249.650 kb on - strand, within PS417_24205 at 5249.650 kb on - strand, within PS417_24205 at 5249.758 kb on + strand, within PS417_24205 at 5249.758 kb on + strand, within PS417_24205 at 5249.758 kb on + strand, within PS417_24205 at 5249.758 kb on + strand, within PS417_24205 at 5249.759 kb on - strand, within PS417_24205 at 5249.850 kb on + strand, within PS417_24205 at 5249.850 kb on + strand, within PS417_24205 at 5249.850 kb on + strand, within PS417_24205 at 5249.850 kb on + strand, within PS417_24205 at 5249.851 kb on - strand, within PS417_24205 at 5249.851 kb on - strand, within PS417_24205 at 5249.920 kb on - strand, within PS417_24205 at 5249.920 kb on - strand, within PS417_24205 at 5249.984 kb on + strand, within PS417_24205 at 5250.042 kb on + strand, within PS417_24205 at 5250.043 kb on - strand, within PS417_24205 at 5250.045 kb on - strand, within PS417_24205 at 5250.114 kb on + strand, within PS417_24205 at 5250.115 kb on - strand, within PS417_24205 at 5250.273 kb on + strand, within PS417_24205
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,247,940 + PS417_24190 0.88 -0.8 5,247,941 - PS417_24190 0.88 +0.4 5,247,941 - PS417_24190 0.88 +0.8 5,247,941 - PS417_24190 0.88 -0.1 5,247,941 - PS417_24190 0.88 -0.1 5,247,941 - PS417_24190 0.88 +0.2 5,247,941 - PS417_24190 0.88 +1.8 5,247,941 - PS417_24190 0.88 -0.1 5,248,043 + -0.3 5,248,044 - +0.2 5,248,057 + +1.3 5,248,058 - +0.4 5,248,069 + +0.1 5,248,070 - -2.4 5,248,112 + -0.8 5,248,140 - +0.1 5,248,161 - -1.9 5,248,161 - -0.7 5,248,166 - +1.0 5,248,200 + -0.0 5,248,209 + -0.7 5,248,210 - +0.6 5,248,262 + PS417_24195 0.11 +0.6 5,248,263 - PS417_24195 0.11 -0.5 5,248,264 + PS417_24195 0.11 -0.7 5,248,264 + PS417_24195 0.11 -0.0 5,248,265 - PS417_24195 0.12 -2.0 5,248,270 + PS417_24195 0.13 -0.9 5,248,270 + PS417_24195 0.13 +0.5 5,248,270 + PS417_24195 0.13 -0.5 5,248,375 + PS417_24195 0.32 -1.6 5,248,375 + PS417_24195 0.32 -0.4 5,248,375 + PS417_24195 0.32 +0.4 5,248,376 - PS417_24195 0.32 -0.6 5,248,376 - PS417_24195 0.32 -0.6 5,248,376 - PS417_24195 0.32 -1.9 5,248,376 - PS417_24195 0.32 +0.4 5,248,376 - PS417_24195 0.32 -0.6 5,248,376 - PS417_24195 0.32 +0.5 5,248,431 - PS417_24195 0.42 +0.0 5,248,476 - PS417_24195 0.50 -0.1 5,248,476 - PS417_24195 0.50 -1.2 5,248,476 - PS417_24195 0.50 +0.3 5,248,588 + PS417_24195 0.70 +2.7 5,248,667 - PS417_24195 0.85 +0.2 5,248,667 - PS417_24195 0.85 +0.7 5,248,747 + +0.3 5,248,779 + +0.6 5,248,780 - -0.5 5,248,780 - -0.8 5,248,802 - -1.8 5,248,815 - -0.1 5,248,815 - -0.0 5,248,838 + +0.8 5,248,975 + -0.1 5,248,984 - PS417_24200 0.21 +0.7 5,248,987 - PS417_24200 0.21 -0.7 5,248,990 - PS417_24200 0.22 -0.0 5,248,990 - PS417_24200 0.22 +0.5 5,248,990 - PS417_24200 0.22 +0.0 5,249,064 - PS417_24200 0.39 +0.1 5,249,118 + PS417_24200 0.51 +0.9 5,249,119 - PS417_24200 0.51 +0.6 5,249,187 - PS417_24200 0.67 +0.8 5,249,224 + PS417_24200 0.75 -1.7 5,249,307 + +0.2 5,249,307 + -1.9 5,249,377 - -0.0 5,249,409 - -0.3 5,249,409 - +0.1 5,249,409 - +8.9 5,249,603 + PS417_24205 0.10 +0.2 5,249,643 + PS417_24205 0.14 +0.8 5,249,643 + PS417_24205 0.14 -0.6 5,249,647 - PS417_24205 0.14 +0.6 5,249,649 + PS417_24205 0.15 +0.1 5,249,649 + PS417_24205 0.15 +0.5 5,249,650 - PS417_24205 0.15 -0.1 5,249,650 - PS417_24205 0.15 -0.4 5,249,758 + PS417_24205 0.25 +0.7 5,249,758 + PS417_24205 0.25 +0.1 5,249,758 + PS417_24205 0.25 -0.2 5,249,758 + PS417_24205 0.25 +0.3 5,249,759 - PS417_24205 0.25 +0.5 5,249,850 + PS417_24205 0.34 -0.2 5,249,850 + PS417_24205 0.34 -2.1 5,249,850 + PS417_24205 0.34 +0.0 5,249,850 + PS417_24205 0.34 -0.2 5,249,851 - PS417_24205 0.34 -0.1 5,249,851 - PS417_24205 0.34 -0.1 5,249,920 - PS417_24205 0.41 -0.4 5,249,920 - PS417_24205 0.41 +0.1 5,249,984 + PS417_24205 0.47 -0.2 5,250,042 + PS417_24205 0.53 +0.8 5,250,043 - PS417_24205 0.53 -0.8 5,250,045 - PS417_24205 0.53 +0.9 5,250,114 + PS417_24205 0.60 +0.1 5,250,115 - PS417_24205 0.60 +0.0 5,250,273 + PS417_24205 0.75 +0.4
Or see this region's nucleotide sequence