Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24305 and PS417_24310 are separated by 35 nucleotides PS417_24310 and PS417_24315 are separated by 58 nucleotides PS417_24315 and PS417_24320 are separated by 287 nucleotides PS417_24320 and PS417_24325 are separated by 45 nucleotides
PS417_24305: PS417_24305 - DNA repair protein RadA, at 5,275,394 to 5,276,761
_24305
PS417_24310: PS417_24310 - ankyrin, at 5,276,797 to 5,277,336
_24310
PS417_24315: PS417_24315 - catalase, at 5,277,395 to 5,278,936
_24315
PS417_24320: PS417_24320 - large-conductance mechanosensitive channel, at 5,279,224 to 5,279,643
_24320
PS417_24325: PS417_24325 - ferredoxin-NADP reductase, at 5,279,689 to 5,280,465
_24325
Position (kb) 5277
5278
5279 Strain fitness (log2 ratio) -2
-1
0
1 at 5276.395 kb on - strand, within PS417_24305 at 5276.435 kb on + strand, within PS417_24305 at 5276.436 kb on - strand, within PS417_24305 at 5276.689 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.793 kb on + strand at 5276.794 kb on - strand at 5276.794 kb on - strand at 5276.934 kb on - strand, within PS417_24310 at 5277.146 kb on + strand, within PS417_24310 at 5277.146 kb on + strand, within PS417_24310 at 5277.176 kb on + strand, within PS417_24310 at 5277.472 kb on - strand at 5277.489 kb on + strand at 5277.489 kb on + strand at 5277.723 kb on + strand, within PS417_24315 at 5277.724 kb on - strand, within PS417_24315 at 5277.838 kb on - strand, within PS417_24315 at 5278.083 kb on + strand, within PS417_24315 at 5278.083 kb on + strand, within PS417_24315 at 5278.083 kb on + strand, within PS417_24315 at 5278.084 kb on - strand, within PS417_24315 at 5278.084 kb on - strand, within PS417_24315 at 5278.512 kb on + strand, within PS417_24315 at 5278.698 kb on - strand, within PS417_24315 at 5279.012 kb on - strand at 5279.012 kb on - strand at 5279.015 kb on + strand at 5279.042 kb on - strand at 5279.108 kb on - strand at 5279.118 kb on + strand at 5279.145 kb on - strand at 5279.181 kb on + strand at 5279.182 kb on - strand at 5279.209 kb on - strand at 5279.224 kb on - strand at 5279.265 kb on + strand at 5279.265 kb on + strand at 5279.266 kb on - strand, within PS417_24320 at 5279.266 kb on - strand, within PS417_24320 at 5279.287 kb on + strand, within PS417_24320 at 5279.293 kb on - strand, within PS417_24320 at 5279.333 kb on + strand, within PS417_24320 at 5279.334 kb on - strand, within PS417_24320 at 5279.401 kb on - strand, within PS417_24320 at 5279.696 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,276,395 - PS417_24305 0.73 -0.3 5,276,435 + PS417_24305 0.76 -0.3 5,276,436 - PS417_24305 0.76 +0.5 5,276,689 + +0.4 5,276,739 + -0.0 5,276,739 + +0.3 5,276,739 + +0.4 5,276,739 + -0.0 5,276,739 + +0.0 5,276,793 + -0.3 5,276,794 - +0.1 5,276,794 - +0.1 5,276,934 - PS417_24310 0.25 -0.4 5,277,146 + PS417_24310 0.65 +0.1 5,277,146 + PS417_24310 0.65 +0.5 5,277,176 + PS417_24310 0.70 +0.1 5,277,472 - -0.4 5,277,489 + -0.1 5,277,489 + +0.8 5,277,723 + PS417_24315 0.21 -0.6 5,277,724 - PS417_24315 0.21 -0.1 5,277,838 - PS417_24315 0.29 -0.9 5,278,083 + PS417_24315 0.45 -0.3 5,278,083 + PS417_24315 0.45 -0.8 5,278,083 + PS417_24315 0.45 -0.3 5,278,084 - PS417_24315 0.45 +0.1 5,278,084 - PS417_24315 0.45 -1.4 5,278,512 + PS417_24315 0.72 -0.8 5,278,698 - PS417_24315 0.85 -0.4 5,279,012 - -0.7 5,279,012 - -0.0 5,279,015 + +0.3 5,279,042 - -1.5 5,279,108 - +0.1 5,279,118 + -0.5 5,279,145 - -0.0 5,279,181 + -0.2 5,279,182 - -0.2 5,279,209 - +0.3 5,279,224 - -1.2 5,279,265 + +0.7 5,279,265 + +0.2 5,279,266 - PS417_24320 0.10 +0.0 5,279,266 - PS417_24320 0.10 -1.8 5,279,287 + PS417_24320 0.15 -0.3 5,279,293 - PS417_24320 0.16 +0.2 5,279,333 + PS417_24320 0.26 -0.2 5,279,334 - PS417_24320 0.26 +0.1 5,279,401 - PS417_24320 0.42 -0.1 5,279,696 + +0.4
Or see this region's nucleotide sequence