Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23530 and PS417_23535 are separated by 221 nucleotides PS417_23535 and PS417_23540 are separated by 101 nucleotides PS417_23540 and PS417_23545 are separated by 15 nucleotides
PS417_23530: PS417_23530 - 1,2-oxophytodienoate reductase, at 5,090,866 to 5,091,969
_23530
PS417_23535: PS417_23535 - glutathione peroxidase, at 5,092,191 to 5,092,673
_23535
PS417_23540: PS417_23540 - CreA, at 5,092,775 to 5,093,239
_23540
PS417_23545: PS417_23545 - gamma-glutamyl kinase, at 5,093,255 to 5,094,373
_23545
Position (kb) 5092
5093
5094 Strain fitness (log2 ratio) -2
-1
0
1 at 5091.842 kb on + strand, within PS417_23530 at 5092.038 kb on + strand at 5092.039 kb on - strand at 5092.140 kb on + strand at 5092.176 kb on + strand at 5092.176 kb on + strand at 5092.188 kb on + strand at 5092.188 kb on + strand at 5092.189 kb on - strand at 5092.519 kb on + strand, within PS417_23535 at 5092.519 kb on + strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand at 5092.520 kb on - strand, within PS417_23535 at 5092.550 kb on - strand, within PS417_23535 at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.745 kb on + strand at 5092.746 kb on - strand at 5092.854 kb on + strand, within PS417_23540 at 5092.854 kb on + strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540 at 5093.076 kb on + strand, within PS417_23540 at 5093.076 kb on + strand, within PS417_23540 at 5093.077 kb on - strand, within PS417_23540 at 5093.245 kb on - strand at 5093.245 kb on - strand at 5093.304 kb on + strand at 5093.305 kb on - strand at 5093.305 kb on - strand at 5093.371 kb on - strand, within PS417_23545 at 5093.371 kb on - strand, within PS417_23545 at 5093.418 kb on - strand, within PS417_23545 at 5093.418 kb on - strand, within PS417_23545
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,091,842 + PS417_23530 0.88 -1.2 5,092,038 + -0.4 5,092,039 - +0.4 5,092,140 + -0.7 5,092,176 + +1.2 5,092,176 + +0.1 5,092,188 + +0.6 5,092,188 + +0.1 5,092,189 - -0.5 5,092,519 + PS417_23535 0.68 -1.4 5,092,519 + PS417_23535 0.68 +0.2 5,092,520 - PS417_23535 0.68 -0.6 5,092,520 - PS417_23535 0.68 +0.1 5,092,520 - -0.5 5,092,520 - PS417_23535 0.68 +0.3 5,092,550 - PS417_23535 0.74 +0.0 5,092,722 + -0.6 5,092,722 + +0.1 5,092,722 + +0.2 5,092,745 + -0.4 5,092,746 - -0.3 5,092,854 + PS417_23540 0.17 -0.3 5,092,854 + PS417_23540 0.17 +0.0 5,092,855 - PS417_23540 0.17 -0.1 5,092,855 - PS417_23540 0.17 +0.0 5,092,857 - PS417_23540 0.18 +0.1 5,092,857 - PS417_23540 0.18 +0.7 5,093,076 + PS417_23540 0.65 -0.3 5,093,076 + PS417_23540 0.65 -0.2 5,093,077 - PS417_23540 0.65 +0.0 5,093,245 - -0.4 5,093,245 - -0.1 5,093,304 + -0.7 5,093,305 - -1.5 5,093,305 - -1.0 5,093,371 - PS417_23545 0.10 -2.6 5,093,371 - PS417_23545 0.10 -2.4 5,093,418 - PS417_23545 0.15 -1.8 5,093,418 - PS417_23545 0.15 +1.4
Or see this region's nucleotide sequence