Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00190 and PS417_00195 are separated by 9 nucleotides PS417_00195 and PS417_00200 are separated by 156 nucleotides PS417_00200 and PS417_00205 are separated by 115 nucleotides PS417_00205 and PS417_00210 are separated by 59 nucleotides
PS417_00190: PS417_00190 - LysR family transcriptional regulator, at 40,050 to 40,946
_00190
PS417_00195: PS417_00195 - hypothetical protein, at 40,956 to 41,282
_00195
PS417_00200: PS417_00200 - hypothetical protein, at 41,439 to 41,654
_00200
PS417_00205: PS417_00205 - hypothetical protein, at 41,770 to 41,997
_00205
PS417_00210: PS417_00210 - hypothetical protein, at 42,057 to 43,058
_00210
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1 at 40.525 kb on - strand, within PS417_00190 at 40.728 kb on + strand at 40.731 kb on + strand, within PS417_00190 at 40.731 kb on + strand, within PS417_00190 at 40.732 kb on - strand at 40.927 kb on + strand at 40.928 kb on - strand at 40.940 kb on + strand at 40.940 kb on + strand at 40.941 kb on - strand at 40.944 kb on + strand at 40.945 kb on - strand at 40.957 kb on + strand at 40.981 kb on + strand at 40.982 kb on - strand at 41.047 kb on + strand, within PS417_00195 at 41.047 kb on + strand, within PS417_00195 at 41.047 kb on + strand, within PS417_00195 at 41.047 kb on + strand, within PS417_00195 at 41.048 kb on - strand, within PS417_00195 at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.317 kb on - strand at 41.317 kb on - strand at 41.320 kb on + strand at 41.351 kb on - strand at 41.351 kb on - strand at 41.351 kb on - strand at 41.355 kb on - strand at 41.390 kb on + strand at 41.417 kb on + strand at 41.417 kb on + strand at 41.458 kb on - strand at 41.458 kb on - strand at 41.648 kb on + strand at 41.648 kb on + strand at 41.649 kb on - strand at 41.702 kb on - strand at 41.745 kb on + strand at 41.764 kb on + strand at 41.764 kb on + strand at 41.793 kb on - strand, within PS417_00205
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 40,525 - PS417_00190 0.53 -0.4 40,728 + +0.4 40,731 + PS417_00190 0.76 -0.2 40,731 + PS417_00190 0.76 +0.3 40,732 - -0.5 40,927 + +0.4 40,928 - -0.0 40,940 + -0.5 40,940 + +0.1 40,941 - -1.1 40,944 + +0.1 40,945 - -0.6 40,957 + -0.5 40,981 + -1.4 40,982 - +0.1 41,047 + PS417_00195 0.28 +0.5 41,047 + PS417_00195 0.28 +0.2 41,047 + PS417_00195 0.28 -0.7 41,047 + PS417_00195 0.28 -1.1 41,048 - PS417_00195 0.28 -0.9 41,316 + -0.3 41,316 + -1.1 41,316 + +0.3 41,316 + -0.2 41,316 + +0.5 41,316 + +0.0 41,317 - -1.0 41,317 - -0.7 41,320 + -0.2 41,351 - -1.0 41,351 - +0.2 41,351 - -0.1 41,355 - -1.1 41,390 + +0.3 41,417 + +0.2 41,417 + +0.1 41,458 - -1.0 41,458 - -0.4 41,648 + -0.3 41,648 + -0.6 41,649 - -0.3 41,702 - +1.1 41,745 + +1.0 41,764 + +0.6 41,764 + -0.9 41,793 - PS417_00205 0.10 +0.4
Or see this region's nucleotide sequence