Strain Fitness in Pseudomonas simiae WCS417 around PS417_19200

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19190 and PS417_19195 are separated by 12 nucleotidesPS417_19195 and PS417_19200 are separated by 193 nucleotidesPS417_19200 and PS417_19205 overlap by 4 nucleotides PS417_19190: PS417_19190 - BolA family transcriptional regulator, at 4,159,166 to 4,159,459 _19190 PS417_19195: PS417_19195 - hypothetical protein, at 4,159,472 to 4,159,993 _19195 PS417_19200: PS417_19200 - fumarate hydratase, at 4,160,187 to 4,161,569 _19200 PS417_19205: PS417_19205 - membrane protein, at 4,161,566 to 4,162,522 _19205 Position (kb) 4160 4161 4162Strain fitness (log2 ratio) -2 -1 0 1at 4159.233 kb on + strand, within PS417_19190at 4159.234 kb on - strand, within PS417_19190at 4159.234 kb on - strand, within PS417_19190at 4159.287 kb on + strand, within PS417_19190at 4159.288 kb on - strand, within PS417_19190at 4159.382 kb on - strand, within PS417_19190at 4159.771 kb on - strand, within PS417_19195at 4159.771 kb on - strand, within PS417_19195at 4159.851 kb on + strand, within PS417_19195at 4159.852 kb on - strand, within PS417_19195at 4159.852 kb on - strand, within PS417_19195at 4159.852 kb on - strand, within PS417_19195at 4160.009 kb on - strandat 4160.020 kb on + strandat 4160.021 kb on - strandat 4160.021 kb on - strandat 4160.082 kb on - strandat 4160.082 kb on - strandat 4160.082 kb on - strandat 4160.125 kb on - strandat 4160.419 kb on + strand, within PS417_19200at 4160.420 kb on - strand, within PS417_19200at 4160.744 kb on + strand, within PS417_19200at 4161.262 kb on - strand, within PS417_19200at 4161.465 kb on + strandat 4161.510 kb on + strandat 4161.554 kb on + strandat 4161.554 kb on + strandat 4161.554 kb on + strandat 4161.699 kb on + strand, within PS417_19205at 4161.700 kb on - strand, within PS417_19205at 4161.832 kb on + strand, within PS417_19205at 4161.933 kb on + strand, within PS417_19205at 4161.934 kb on - strand, within PS417_19205at 4161.934 kb on - strand, within PS417_19205at 4161.996 kb on + strand, within PS417_19205at 4161.997 kb on - strand, within PS417_19205at 4162.010 kb on - strand, within PS417_19205at 4162.047 kb on + strand, within PS417_19205at 4162.130 kb on + strand, within PS417_19205at 4162.130 kb on + strand, within PS417_19205at 4162.251 kb on + strand, within PS417_19205at 4162.251 kb on + strand, within PS417_19205at 4162.251 kb on + strand, within PS417_19205at 4162.252 kb on - strand, within PS417_19205at 4162.260 kb on + strand, within PS417_19205at 4162.260 kb on + strand, within PS417_19205at 4162.560 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,159,233 + PS417_19190 0.23 -1.2
4,159,234 - PS417_19190 0.23 -0.3
4,159,234 - PS417_19190 0.23 +0.1
4,159,287 + PS417_19190 0.41 -0.7
4,159,288 - PS417_19190 0.41 -0.8
4,159,382 - PS417_19190 0.73 -0.4
4,159,771 - PS417_19195 0.57 +0.3
4,159,771 - PS417_19195 0.57 +0.8
4,159,851 + PS417_19195 0.73 -2.0
4,159,852 - PS417_19195 0.73 +0.1
4,159,852 - PS417_19195 0.73 -2.1
4,159,852 - PS417_19195 0.73 +0.7
4,160,009 - -0.4
4,160,020 + -0.4
4,160,021 - -0.1
4,160,021 - -0.2
4,160,082 - -0.1
4,160,082 - -0.6
4,160,082 - -0.1
4,160,125 - -0.2
4,160,419 + PS417_19200 0.17 -1.5
4,160,420 - PS417_19200 0.17 -0.4
4,160,744 + PS417_19200 0.40 -1.4
4,161,262 - PS417_19200 0.78 -0.6
4,161,465 + +0.1
4,161,510 + -0.8
4,161,554 + -0.1
4,161,554 + +0.1
4,161,554 + -0.1
4,161,699 + PS417_19205 0.14 +1.0
4,161,700 - PS417_19205 0.14 +0.0
4,161,832 + PS417_19205 0.28 -0.1
4,161,933 + PS417_19205 0.38 +0.1
4,161,934 - PS417_19205 0.38 +0.6
4,161,934 - PS417_19205 0.38 -0.0
4,161,996 + PS417_19205 0.45 +0.7
4,161,997 - PS417_19205 0.45 -0.2
4,162,010 - PS417_19205 0.46 -0.5
4,162,047 + PS417_19205 0.50 +1.4
4,162,130 + PS417_19205 0.59 -0.1
4,162,130 + PS417_19205 0.59 -2.4
4,162,251 + PS417_19205 0.72 +0.2
4,162,251 + PS417_19205 0.72 -0.5
4,162,251 + PS417_19205 0.72 -1.4
4,162,252 - PS417_19205 0.72 +1.0
4,162,260 + PS417_19205 0.73 -0.1
4,162,260 + PS417_19205 0.73 -0.2
4,162,560 + +0.3

Or see this region's nucleotide sequence