Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18940 and PS417_18945 are separated by 183 nucleotides PS417_18945 and PS417_18950 are separated by 17 nucleotides PS417_18950 and PS417_18955 are separated by 20 nucleotides
PS417_18940: PS417_18940 - LysR family transcriptional regulator, at 4,102,008 to 4,102,982
_18940
PS417_18945: PS417_18945 - endoribonuclease, at 4,103,166 to 4,103,588
_18945
PS417_18950: PS417_18950 - 3-dehydroquinate dehydratase, at 4,103,606 to 4,104,052
_18950
PS417_18955: PS417_18955 - FAD-dependent oxidoreductase, at 4,104,073 to 4,105,323
_18955
Position (kb) 4103
4104 Strain fitness (log2 ratio) -1
0
1
2 at 4102.363 kb on + strand, within PS417_18940 at 4102.363 kb on + strand, within PS417_18940 at 4102.453 kb on + strand, within PS417_18940 at 4102.472 kb on - strand, within PS417_18940 at 4102.472 kb on - strand, within PS417_18940 at 4102.732 kb on + strand, within PS417_18940 at 4102.732 kb on + strand, within PS417_18940 at 4102.967 kb on + strand at 4102.967 kb on + strand at 4102.968 kb on - strand at 4103.010 kb on - strand at 4103.010 kb on - strand at 4103.211 kb on + strand, within PS417_18945 at 4103.211 kb on + strand, within PS417_18945 at 4103.217 kb on - strand, within PS417_18945 at 4103.271 kb on + strand, within PS417_18945 at 4103.271 kb on + strand, within PS417_18945 at 4103.272 kb on - strand, within PS417_18945 at 4103.272 kb on - strand, within PS417_18945 at 4103.422 kb on - strand, within PS417_18945 at 4103.675 kb on + strand, within PS417_18950 at 4103.846 kb on + strand, within PS417_18950 at 4103.846 kb on + strand, within PS417_18950 at 4103.847 kb on - strand, within PS417_18950 at 4103.847 kb on - strand, within PS417_18950 at 4103.917 kb on + strand, within PS417_18950 at 4103.917 kb on + strand, within PS417_18950 at 4103.951 kb on + strand, within PS417_18950 at 4103.951 kb on + strand, within PS417_18950 at 4103.952 kb on - strand, within PS417_18950 at 4103.952 kb on - strand, within PS417_18950 at 4103.952 kb on - strand, within PS417_18950 at 4104.072 kb on + strand at 4104.072 kb on + strand at 4104.143 kb on + strand at 4104.144 kb on - strand at 4104.166 kb on - strand at 4104.313 kb on - strand, within PS417_18955 at 4104.313 kb on - strand, within PS417_18955 at 4104.335 kb on - strand, within PS417_18955 at 4104.544 kb on + strand, within PS417_18955 at 4104.544 kb on + strand, within PS417_18955 at 4104.545 kb on - strand, within PS417_18955
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,102,363 + PS417_18940 0.36 -0.2 4,102,363 + PS417_18940 0.36 -0.9 4,102,453 + PS417_18940 0.46 -0.0 4,102,472 - PS417_18940 0.48 +0.4 4,102,472 - PS417_18940 0.48 -0.2 4,102,732 + PS417_18940 0.74 -0.1 4,102,732 + PS417_18940 0.74 +0.5 4,102,967 + -0.0 4,102,967 + +0.2 4,102,968 - -1.5 4,103,010 - -0.2 4,103,010 - +0.5 4,103,211 + PS417_18945 0.11 -0.0 4,103,211 + PS417_18945 0.11 -0.8 4,103,217 - PS417_18945 0.12 -0.4 4,103,271 + PS417_18945 0.25 -0.3 4,103,271 + PS417_18945 0.25 -1.1 4,103,272 - PS417_18945 0.25 -0.8 4,103,272 - PS417_18945 0.25 -1.3 4,103,422 - PS417_18945 0.61 -0.1 4,103,675 + PS417_18950 0.15 -0.3 4,103,846 + PS417_18950 0.54 +1.9 4,103,846 + PS417_18950 0.54 -1.5 4,103,847 - PS417_18950 0.54 -0.0 4,103,847 - PS417_18950 0.54 +0.0 4,103,917 + PS417_18950 0.70 +0.0 4,103,917 + PS417_18950 0.70 -0.4 4,103,951 + PS417_18950 0.77 -0.8 4,103,951 + PS417_18950 0.77 +0.1 4,103,952 - PS417_18950 0.77 +1.6 4,103,952 - PS417_18950 0.77 -0.6 4,103,952 - PS417_18950 0.77 +0.7 4,104,072 + -0.1 4,104,072 + +1.1 4,104,143 + +0.5 4,104,144 - -0.1 4,104,166 - -0.7 4,104,313 - PS417_18955 0.19 +0.0 4,104,313 - PS417_18955 0.19 +0.2 4,104,335 - PS417_18955 0.21 +0.9 4,104,544 + PS417_18955 0.38 -0.1 4,104,544 + PS417_18955 0.38 -0.0 4,104,545 - PS417_18955 0.38 +0.3
Or see this region's nucleotide sequence