Strain Fitness in Pseudomonas simiae WCS417 around PS417_09995

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,151,158	-				-0.1
2,151,464	-				-0.4
2,151,464	-				-0.2
2,151,464	-				-0.4
2,151,464	-				-0.5
2,151,464	-				-0.2
2,151,464	-				+0.4
2,151,464	-				+0.7
2,151,491	-				-0.2
2,151,491	-				-1.5
2,151,584	-		PS417_09995	0.28	-1.0
2,151,846	-		PS417_09995	0.89	-0.5
2,152,160	+		PS417_10000	0.25	-1.3
2,152,160	+		PS417_10000	0.25	+0.5
2,152,160	+		PS417_10000	0.25	+0.1
2,152,160	+		PS417_10000	0.25	+0.5
2,152,160	+		PS417_10000	0.25	+0.1
2,152,161	-		PS417_10000	0.25	+0.0
2,152,161	-				+1.1
2,152,161	-		PS417_10000	0.25	-0.2
2,152,161	-		PS417_10000	0.25	+0.1
2,152,161	-		PS417_10000	0.25	-0.0
2,152,235	+				-0.7
2,152,237	+		PS417_10000	0.34	+0.4
2,152,237	+		PS417_10000	0.34	-0.0
2,152,238	-		PS417_10000	0.34	+1.2
2,152,238	-		PS417_10000	0.34	-0.1
2,152,500	-		PS417_10000	0.67	-0.9
2,152,524	-		PS417_10000	0.70	-0.1
2,152,581	-		PS417_10000	0.77	-0.1
2,152,581	-		PS417_10000	0.77	-2.3
2,152,581	-		PS417_10000	0.77	+0.1
2,152,581	-		PS417_10000	0.77	+1.1
2,152,638	-		PS417_10000	0.84	-0.2
2,152,702	-				+1.0