Strain Fitness in Pseudomonas simiae WCS417 around PS417_08220

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08215 and PS417_08220 overlap by 4 nucleotidesPS417_08220 and PS417_08225 overlap by 1 nucleotides PS417_08215: PS417_08215 - flippase, at 1,799,291 to 1,800,601 _08215 PS417_08220: PS417_08220 - epimerase, at 1,800,598 to 1,801,530 _08220 PS417_08225: PS417_08225 - acetolactate synthase, at 1,801,530 to 1,803,245 _08225 Position (kb) 1800 1801 1802Strain fitness (log2 ratio) -1 0 1at 1800.702 kb on - strand, within PS417_08220at 1800.836 kb on - strandat 1800.938 kb on - strandat 1802.276 kb on - strand, within PS417_08225at 1802.477 kb on - strand, within PS417_08225at 1802.517 kb on - strand, within PS417_08225at 1802.521 kb on - strand, within PS417_08225

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,800,702 - PS417_08220 0.11 -0.8
1,800,836 - -0.3
1,800,938 - +0.8
1,802,276 - PS417_08225 0.43 -0.6
1,802,477 - PS417_08225 0.55 -0.2
1,802,517 - PS417_08225 0.58 +0.4
1,802,521 - PS417_08225 0.58 -1.0

Or see this region's nucleotide sequence