Strain Fitness in Pseudomonas simiae WCS417 around PS417_05285

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05270 and PS417_05275 are separated by 13 nucleotidesPS417_05275 and PS417_05285 are separated by 87 nucleotidesPS417_05285 and PS417_05290 overlap by 4 nucleotides PS417_05270: PS417_05270 - 3-oxoacyl-ACP reductase, at 1,169,373 to 1,170,122 _05270 PS417_05275: PS417_05275 - hypothetical protein, at 1,170,136 to 1,170,429 _05275 PS417_05285: PS417_05285 - cobalamin biosynthesis protein CobW, at 1,170,517 to 1,171,491 _05285 PS417_05290: PS417_05290 - hypothetical protein, at 1,171,488 to 1,172,663 _05290 Position (kb) 1170 1171 1172Strain fitness (log2 ratio) -2 -1 0 1at 1169.803 kb on + strand, within PS417_05270at 1169.803 kb on + strand, within PS417_05270at 1169.803 kb on + strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.804 kb on - strand, within PS417_05270at 1169.807 kb on + strand, within PS417_05270at 1169.807 kb on + strand, within PS417_05270at 1169.808 kb on - strand, within PS417_05270at 1169.808 kb on - strand, within PS417_05270at 1170.131 kb on + strandat 1170.132 kb on - strandat 1170.428 kb on - strandat 1170.428 kb on - strandat 1170.489 kb on + strandat 1170.656 kb on + strand, within PS417_05285at 1170.656 kb on + strand, within PS417_05285at 1170.656 kb on + strand, within PS417_05285at 1170.657 kb on - strand, within PS417_05285at 1170.687 kb on - strand, within PS417_05285at 1170.687 kb on - strand, within PS417_05285at 1171.262 kb on + strand, within PS417_05285at 1171.499 kb on - strandat 1171.511 kb on + strandat 1171.578 kb on + strandat 1171.578 kb on + strandat 1171.635 kb on + strand, within PS417_05290at 1172.257 kb on - strand, within PS417_05290at 1172.355 kb on + strand, within PS417_05290at 1172.355 kb on + strand, within PS417_05290at 1172.355 kb on + strand, within PS417_05290at 1172.356 kb on - strand, within PS417_05290at 1172.412 kb on + strand, within PS417_05290at 1172.412 kb on + strand, within PS417_05290at 1172.412 kb on + strand, within PS417_05290at 1172.412 kb on + strand, within PS417_05290at 1172.412 kb on + strand, within PS417_05290at 1172.412 kb on + strand, within PS417_05290at 1172.413 kb on - strand, within PS417_05290at 1172.413 kb on - strand, within PS417_05290

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,169,803 + PS417_05270 0.57 -0.1
1,169,803 + PS417_05270 0.57 -0.3
1,169,803 + PS417_05270 0.57 +0.3
1,169,804 - PS417_05270 0.57 -0.8
1,169,804 - PS417_05270 0.57 +0.0
1,169,804 - PS417_05270 0.57 -2.1
1,169,804 - PS417_05270 0.57 +0.2
1,169,804 - PS417_05270 0.57 -1.7
1,169,807 + PS417_05270 0.58 -0.2
1,169,807 + PS417_05270 0.58 -0.2
1,169,808 - PS417_05270 0.58 -1.1
1,169,808 - PS417_05270 0.58 +0.1
1,170,131 + +0.6
1,170,132 - +1.7
1,170,428 - +0.2
1,170,428 - -1.1
1,170,489 + +0.5
1,170,656 + PS417_05285 0.14 -0.3
1,170,656 + PS417_05285 0.14 -1.4
1,170,656 + PS417_05285 0.14 -0.1
1,170,657 - PS417_05285 0.14 -0.3
1,170,687 - PS417_05285 0.17 -0.7
1,170,687 - PS417_05285 0.17 -1.0
1,171,262 + PS417_05285 0.76 -0.4
1,171,499 - -0.0
1,171,511 + -0.1
1,171,578 + -0.1
1,171,578 + +1.2
1,171,635 + PS417_05290 0.12 -0.3
1,172,257 - PS417_05290 0.65 -0.0
1,172,355 + PS417_05290 0.74 +0.7
1,172,355 + PS417_05290 0.74 -1.0
1,172,355 + PS417_05290 0.74 -0.0
1,172,356 - PS417_05290 0.74 -0.3
1,172,412 + PS417_05290 0.79 -0.3
1,172,412 + PS417_05290 0.79 -0.1
1,172,412 + PS417_05290 0.79 -1.3
1,172,412 + PS417_05290 0.79 +0.3
1,172,412 + PS417_05290 0.79 -0.2
1,172,412 + PS417_05290 0.79 -0.3
1,172,413 - PS417_05290 0.79 +1.1
1,172,413 - PS417_05290 0.79 +0.4

Or see this region's nucleotide sequence