Strain Fitness in Pseudomonas simiae WCS417 around PS417_04555

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,006,988	+		PS417_04550	0.44	-0.3
1,007,008	-		PS417_04550	0.45	-0.1
1,007,030	+		PS417_04550	0.47	+0.4
1,007,063	+		PS417_04550	0.49	+0.0
1,007,166	-		PS417_04550	0.57	+0.5
1,007,166	-		PS417_04550	0.57	+0.4
1,007,210	+		PS417_04550	0.60	+0.4
1,007,211	-		PS417_04550	0.60	-0.4
1,007,211	-		PS417_04550	0.60	-0.5
1,007,211	-		PS417_04550	0.60	+0.5
1,007,267	+		PS417_04550	0.64	-0.1
1,007,267	+		PS417_04550	0.64	+0.2
1,007,267	+		PS417_04550	0.64	-0.1
1,007,267	+		PS417_04550	0.64	+0.2
1,007,268	-		PS417_04550	0.64	-0.6
1,007,268	-		PS417_04550	0.64	-1.0
1,007,268	-		PS417_04550	0.64	+0.5
1,007,268	-		PS417_04550	0.64	+0.2
1,007,268	-		PS417_04550	0.64	-0.8
1,007,268	-		PS417_04550	0.64	-0.2
1,007,268	-		PS417_04550	0.64	+0.6
1,007,268	-		PS417_04550	0.64	-0.4
1,007,321	+		PS417_04550	0.68	-0.6
1,007,340	-		PS417_04550	0.69	-0.5
1,007,474	+		PS417_04550	0.79	-1.0
1,007,474	+		PS417_04550	0.79	+0.4
1,007,585	+		PS417_04550	0.87	+0.1
1,007,585	+		PS417_04550	0.87	+0.7
1,007,586	-		PS417_04550	0.87	-0.3
1,007,586	-		PS417_04550	0.87	+0.4
1,007,588	+		PS417_04550	0.87	-0.1
1,007,588	+		PS417_04550	0.87	-0.7
1,007,589	-		PS417_04550	0.88	+0.0
1,007,627	+				-0.4
1,007,628	-				-0.4
1,007,628	-				-0.2
1,007,687	+				-0.2
1,007,767	-				-0.1
1,007,927	-				-0.0
1,007,927	-				+0.4
1,007,969	+				+0.1
1,007,970	-				+0.4
1,008,051	-				+0.2
1,008,661	-		PS417_04555	0.25	-0.3
1,008,807	-		PS417_04555	0.30	+0.1
1,008,944	+		PS417_04555	0.35	-0.3
1,009,228	-		PS417_04555	0.46	+1.3
1,009,228	-		PS417_04555	0.46	-0.7
1,009,469	+		PS417_04555	0.54	-0.1
1,009,758	-		PS417_04555	0.65	-0.2
1,009,758	-		PS417_04555	0.65	+0.1
1,009,758	-		PS417_04555	0.65	+1.3
1,009,758	-		PS417_04555	0.65	-0.3
1,009,758	-		PS417_04555	0.65	-0.4
1,009,784	+		PS417_04555	0.66	-0.3
1,009,785	-		PS417_04555	0.66	+0.4
1,009,981	+		PS417_04555	0.73	-0.7
1,009,981	+		PS417_04555	0.73	-0.5
1,009,981	+		PS417_04555	0.73	-0.1
1,009,982	-		PS417_04555	0.73	+0.1
1,009,982	-		PS417_04555	0.73	+0.2
1,010,006	+		PS417_04555	0.74	+0.5
1,010,102	+		PS417_04555	0.78	-0.8
1,010,102	+		PS417_04555	0.78	+0.1
1,010,102	+				+0.8
1,010,103	-		PS417_04555	0.78	+0.2
1,010,103	-		PS417_04555	0.78	+1.7
1,010,159	-		PS417_04555	0.80	-0.4
1,010,368	-		PS417_04555	0.87	-0.0
1,010,512	+				-1.1
1,010,513	-				-0.1
1,010,602	+				-0.6
1,010,603	-				-0.5
1,010,603	-				+0.2
1,010,658	+				-0.0
1,010,658	+				+1.0
1,010,658	+				-0.0
1,010,732	+				-0.7
1,010,732	+				-1.0
1,010,732	+				-0.1
1,010,736	-				-1.4
1,010,744	+				-0.1
1,010,744	+				-0.2
1,010,745	-				+0.3
1,010,745	-				+1.6
1,010,773	-				-0.5
1,011,117	+		PS417_04560	0.49	+0.1
1,011,117	+		PS417_04560	0.49	+0.2
1,011,127	+		PS417_04560	0.51	-0.7
1,011,128	-		PS417_04560	0.51	-1.1
1,011,206	+		PS417_04560	0.63	-0.5
1,011,348	+		PS417_04560	0.85	+0.1
1,011,348	+		PS417_04560	0.85	+0.3
1,011,348	+		PS417_04560	0.85	-0.4
1,011,348	+		PS417_04560	0.85	+0.0
1,011,348	+		PS417_04560	0.85	+1.8
1,011,349	-		PS417_04560	0.85	+0.1
1,011,351	-		PS417_04560	0.86	+0.4
1,011,472	+				-0.0
1,011,472	+				+1.3
1,011,472	+				-0.7
1,011,472	+				-0.1
1,011,473	-				-0.5
1,011,491	-				+0.0
1,011,538	-				+0.2
1,011,609	+				-0.3
1,011,609	+				-0.5
1,011,609	+				-0.3
1,011,610	-				+0.3
1,011,610	-				-0.0
1,011,610	-				-1.2
1,011,610	-				-0.1
1,011,610	-				+0.0
1,011,676	+				+0.1
1,011,677	-				-0.4
1,011,677	-				-1.0
1,011,711	+				-0.9