Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03300 and PS417_03305 are separated by 120 nucleotides PS417_03305 and PS417_03310 are separated by 139 nucleotides PS417_03310 and PS417_03315 overlap by 4 nucleotides PS417_03315 and PS417_03320 are separated by 143 nucleotides
PS417_03300: PS417_03300 - alanine acetyltransferase, at 757,121 to 757,573
_03300
PS417_03305: PS417_03305 - HPr, at 757,694 to 758,098
_03305
PS417_03310: PS417_03310 - carbonate dehydratase, at 758,238 to 758,882
_03310
PS417_03315: PS417_03315 - hypothetical protein, at 758,879 to 759,406
_03315
PS417_03320: PS417_03320 - hypothetical protein, at 759,550 to 760,719
_03320
Position (kb) 758
759 Strain fitness (log2 ratio) -1
0
1 at 757.245 kb on - strand, within PS417_03300 at 757.338 kb on + strand, within PS417_03300 at 757.469 kb on + strand, within PS417_03300 at 757.470 kb on - strand, within PS417_03300 at 757.512 kb on - strand, within PS417_03300 at 757.512 kb on - strand, within PS417_03300 at 757.515 kb on - strand, within PS417_03300 at 758.123 kb on + strand at 758.125 kb on + strand at 758.125 kb on + strand at 758.125 kb on + strand at 758.126 kb on - strand at 758.126 kb on - strand at 758.126 kb on - strand at 758.248 kb on + strand at 758.248 kb on + strand at 758.347 kb on - strand, within PS417_03310 at 758.347 kb on - strand, within PS417_03310 at 758.532 kb on + strand, within PS417_03310 at 758.617 kb on - strand, within PS417_03310 at 758.619 kb on + strand, within PS417_03310 at 758.781 kb on + strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.880 kb on + strand at 759.150 kb on + strand, within PS417_03315 at 759.208 kb on - strand, within PS417_03315 at 759.230 kb on + strand, within PS417_03315 at 759.230 kb on + strand, within PS417_03315 at 759.231 kb on - strand, within PS417_03315 at 759.231 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.379 kb on + strand at 759.380 kb on - strand at 759.406 kb on + strand at 759.406 kb on + strand at 759.407 kb on - strand at 759.420 kb on + strand at 759.421 kb on - strand at 759.452 kb on - strand at 759.509 kb on + strand at 759.678 kb on - strand, within PS417_03320 at 759.858 kb on - strand, within PS417_03320 at 759.858 kb on - strand, within PS417_03320 at 759.879 kb on - strand, within PS417_03320
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 757,245 - PS417_03300 0.27 +1.5 757,338 + PS417_03300 0.48 +0.7 757,469 + PS417_03300 0.77 +0.0 757,470 - PS417_03300 0.77 -0.4 757,512 - PS417_03300 0.86 -0.5 757,512 - PS417_03300 0.86 -0.6 757,515 - PS417_03300 0.87 -0.6 758,123 + +1.4 758,125 + +1.6 758,125 + -0.2 758,125 + +0.3 758,126 - +0.3 758,126 - +0.1 758,126 - +0.3 758,248 + +0.5 758,248 + -0.4 758,347 - PS417_03310 0.17 +0.2 758,347 - PS417_03310 0.17 -0.9 758,532 + PS417_03310 0.46 -1.0 758,617 - PS417_03310 0.59 -0.4 758,619 + PS417_03310 0.59 -1.5 758,781 + PS417_03310 0.84 -0.8 758,782 - PS417_03310 0.84 -1.6 758,782 - PS417_03310 0.84 -0.5 758,880 + +0.2 759,150 + PS417_03315 0.51 -1.3 759,208 - PS417_03315 0.62 -1.5 759,230 + PS417_03315 0.66 -0.1 759,230 + PS417_03315 0.66 -0.7 759,231 - PS417_03315 0.67 -0.9 759,231 - PS417_03315 0.67 -0.3 759,291 - PS417_03315 0.78 +0.3 759,291 - PS417_03315 0.78 -0.1 759,291 - PS417_03315 0.78 -0.3 759,291 - PS417_03315 0.78 +0.6 759,379 + -0.0 759,380 - +0.0 759,406 + -0.6 759,406 + -0.2 759,407 - -0.3 759,420 + -0.2 759,421 - -0.3 759,452 - -0.4 759,509 + -0.2 759,678 - PS417_03320 0.11 -0.2 759,858 - PS417_03320 0.26 -0.1 759,858 - PS417_03320 0.26 -1.2 759,879 - PS417_03320 0.28 -0.1
Or see this region's nucleotide sequence