Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02095 and PS417_02100 overlap by 4 nucleotides PS417_02100 and PS417_02105 overlap by 4 nucleotides PS417_02105 and PS417_02110 are separated by 9 nucleotides PS417_02110 and PS417_02115 overlap by 23 nucleotides PS417_02115 and PS417_02120 overlap by 25 nucleotides
PS417_02095: PS417_02095 - AMP-binding protein, at 469,059 to 470,729
_02095
PS417_02100: PS417_02100 - membrane protein, at 470,726 to 471,271
_02100
PS417_02105: PS417_02105 - acyl carrier protein, at 471,268 to 471,522
_02105
PS417_02110: PS417_02110 - acyl carrier protein, at 471,532 to 471,801
_02110
PS417_02115: PS417_02115 - acyltransferase, at 471,779 to 472,591
_02115
PS417_02120: PS417_02120 - 3-oxoacyl-ACP synthase, at 472,567 to 473,286
_02120
Position (kb) 471
472 Strain fitness (log2 ratio) -1
0
1 at 470.575 kb on + strand at 470.811 kb on + strand, within PS417_02100 at 470.811 kb on + strand, within PS417_02100 at 470.913 kb on + strand, within PS417_02100 at 470.913 kb on + strand, within PS417_02100 at 470.914 kb on - strand, within PS417_02100 at 470.983 kb on - strand, within PS417_02100 at 471.210 kb on + strand, within PS417_02100 at 471.210 kb on + strand, within PS417_02100 at 471.211 kb on - strand, within PS417_02100 at 471.211 kb on - strand, within PS417_02100 at 471.294 kb on - strand, within PS417_02105 at 471.375 kb on + strand, within PS417_02105 at 471.375 kb on + strand, within PS417_02105 at 471.504 kb on + strand at 471.769 kb on + strand, within PS417_02110 at 471.825 kb on + strand at 471.899 kb on + strand, within PS417_02115 at 471.899 kb on + strand, within PS417_02115 at 471.899 kb on + strand, within PS417_02115 at 471.900 kb on - strand, within PS417_02115 at 471.900 kb on - strand, within PS417_02115 at 471.901 kb on + strand, within PS417_02115 at 472.172 kb on - strand, within PS417_02115 at 472.174 kb on - strand, within PS417_02115 at 472.409 kb on - strand, within PS417_02115 at 472.409 kb on - strand, within PS417_02115 at 472.546 kb on - strand at 472.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 470,575 + -0.1 470,811 + PS417_02100 0.16 +0.5 470,811 + PS417_02100 0.16 -0.2 470,913 + PS417_02100 0.34 +0.0 470,913 + PS417_02100 0.34 +0.0 470,914 - PS417_02100 0.34 -0.8 470,983 - PS417_02100 0.47 -0.1 471,210 + PS417_02100 0.89 -0.5 471,210 + PS417_02100 0.89 -0.5 471,211 - PS417_02100 0.89 +0.9 471,211 - PS417_02100 0.89 -0.4 471,294 - PS417_02105 0.10 -0.5 471,375 + PS417_02105 0.42 -0.3 471,375 + PS417_02105 0.42 +0.1 471,504 + +0.1 471,769 + PS417_02110 0.88 -0.7 471,825 + -0.2 471,899 + PS417_02115 0.15 +0.8 471,899 + PS417_02115 0.15 -0.5 471,899 + PS417_02115 0.15 +0.4 471,900 - PS417_02115 0.15 -0.4 471,900 - PS417_02115 0.15 -1.4 471,901 + PS417_02115 0.15 +0.0 472,172 - PS417_02115 0.48 -0.2 472,174 - PS417_02115 0.49 -0.5 472,409 - PS417_02115 0.77 +0.2 472,409 - PS417_02115 0.77 +0.8 472,546 - -0.6 472,546 - -0.2
Or see this region's nucleotide sequence