Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01620 and PS417_01625 are separated by 119 nucleotides PS417_01625 and PS417_01630 overlap by 2 nucleotides PS417_01630 and PS417_01635 are separated by 532 nucleotides
PS417_01620: PS417_01620 - preprotein translocase subunit SecB, at 356,143 to 356,622
_01620
PS417_01625: PS417_01625 - rRNA methylase, at 356,742 to 357,197
_01625
PS417_01630: PS417_01630 - hypothetical protein, at 357,196 to 357,636
_01630
PS417_01635: PS417_01635 - nitrogen regulation protein NR(I), at 358,169 to 359,605
_01635
Position (kb) 357
358 Strain fitness (log2 ratio) -2
-1
0
1
2 at 356.209 kb on + strand, within PS417_01620 at 356.209 kb on + strand, within PS417_01620 at 356.407 kb on - strand, within PS417_01620 at 356.620 kb on + strand at 356.620 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.735 kb on + strand at 356.743 kb on + strand at 356.868 kb on + strand, within PS417_01625 at 357.261 kb on + strand, within PS417_01630 at 357.262 kb on - strand, within PS417_01630 at 357.818 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 358.085 kb on + strand at 358.085 kb on + strand at 358.112 kb on + strand at 358.113 kb on - strand at 358.114 kb on + strand at 358.114 kb on + strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.244 kb on - strand at 358.563 kb on + strand, within PS417_01635 at 358.563 kb on + strand, within PS417_01635
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 356,209 + PS417_01620 0.14 +0.5 356,209 + PS417_01620 0.14 +0.4 356,407 - PS417_01620 0.55 -1.0 356,620 + -0.3 356,620 + -0.1 356,681 + -0.9 356,681 + -0.2 356,681 + -0.1 356,681 + +0.3 356,681 + +0.0 356,681 + -0.0 356,681 + +0.3 356,682 - +0.1 356,682 - +1.2 356,682 - -2.1 356,682 - +0.0 356,682 - -0.0 356,682 - -0.5 356,682 - +0.3 356,682 - -0.8 356,682 - -0.3 356,735 + +1.0 356,743 + +0.3 356,868 + PS417_01625 0.28 +2.4 357,261 + PS417_01630 0.15 -0.9 357,262 - PS417_01630 0.15 -0.6 357,818 - -0.2 357,843 - +0.4 357,843 - -0.1 357,843 - -0.5 357,843 - -0.0 357,843 - +1.0 357,843 - -0.1 358,085 + +0.6 358,085 + -0.7 358,112 + -0.4 358,113 - +0.3 358,114 + +0.2 358,114 + -1.3 358,115 - -0.2 358,115 - -0.3 358,115 - +0.6 358,244 - -1.4 358,563 + PS417_01635 0.27 -0.6 358,563 + PS417_01635 0.27 -0.7
Or see this region's nucleotide sequence