Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00510 and PS417_00515 are separated by 211 nucleotides PS417_00515 and PS417_00520 are separated by 68 nucleotides
PS417_00510: PS417_00510 - membrane protein, at 101,534 to 103,192
_00510
PS417_00515: PS417_00515 - membrane protein, at 103,404 to 104,171
_00515
PS417_00520: PS417_00520 - citrate transporter, at 104,240 to 105,547
_00520
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.614 kb on + strand, within PS417_00510 at 103.150 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.259 kb on + strand at 103.260 kb on - strand at 103.266 kb on + strand at 103.267 kb on - strand at 103.267 kb on - strand at 103.273 kb on + strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.310 kb on + strand at 103.310 kb on + strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.525 kb on + strand, within PS417_00515 at 103.525 kb on + strand, within PS417_00515 at 103.531 kb on + strand, within PS417_00515 at 103.708 kb on - strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.855 kb on + strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 104.037 kb on - strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.195 kb on - strand at 104.243 kb on + strand at 104.243 kb on + strand at 104.243 kb on + strand at 104.244 kb on - strand at 104.244 kb on - strand at 104.291 kb on + strand at 104.377 kb on - strand, within PS417_00520 at 104.500 kb on - strand, within PS417_00520 at 104.500 kb on - strand, within PS417_00520 at 104.656 kb on + strand, within PS417_00520 at 104.657 kb on - strand, within PS417_00520 at 104.691 kb on - strand, within PS417_00520 at 104.742 kb on + strand, within PS417_00520 at 104.964 kb on + strand, within PS417_00520
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 102,614 + PS417_00510 0.65 -1.4 103,150 + -0.1 103,253 + +0.5 103,253 + +0.4 103,253 + +0.4 103,253 + +0.2 103,253 + +0.8 103,254 - +0.1 103,254 - +0.1 103,254 - -0.4 103,259 + -0.6 103,260 - -0.2 103,266 + +0.7 103,267 - -0.4 103,267 - -0.4 103,273 + -2.2 103,274 - +1.6 103,274 - +0.1 103,274 - -0.5 103,274 - +0.3 103,274 - +0.6 103,307 - -0.1 103,307 - -0.1 103,307 - -0.1 103,310 + -0.2 103,310 + +0.2 103,311 - -0.4 103,311 - +0.4 103,311 - -0.6 103,311 - -0.7 103,311 - -0.3 103,311 - +0.3 103,525 + PS417_00515 0.16 +0.7 103,525 + PS417_00515 0.16 +1.9 103,531 + PS417_00515 0.17 +0.8 103,708 - PS417_00515 0.40 +1.0 103,789 + PS417_00515 0.50 +1.0 103,789 + PS417_00515 0.50 +0.6 103,789 + PS417_00515 0.50 +0.8 103,790 - PS417_00515 0.50 +0.4 103,790 - PS417_00515 0.50 +0.7 103,790 - PS417_00515 0.50 +1.2 103,790 - PS417_00515 0.50 +0.9 103,790 - PS417_00515 0.50 +1.0 103,790 - PS417_00515 0.50 +0.7 103,790 - PS417_00515 0.50 +0.9 103,790 - PS417_00515 0.50 +1.0 103,855 + PS417_00515 0.59 +1.6 103,856 - PS417_00515 0.59 +1.2 103,856 - PS417_00515 0.59 +0.9 103,856 - PS417_00515 0.59 +1.8 104,037 - PS417_00515 0.82 -0.1 104,048 + PS417_00515 0.84 -0.1 104,048 + PS417_00515 0.84 +0.7 104,049 - PS417_00515 0.84 +0.8 104,049 - PS417_00515 0.84 +1.6 104,049 - PS417_00515 0.84 +1.4 104,049 - PS417_00515 0.84 +0.0 104,049 - PS417_00515 0.84 +1.0 104,049 - PS417_00515 0.84 +1.9 104,195 - +0.5 104,243 + -0.2 104,243 + +0.1 104,243 + +0.6 104,244 - -0.5 104,244 - -0.0 104,291 + +0.8 104,377 - PS417_00520 0.10 -0.8 104,500 - PS417_00520 0.20 -0.4 104,500 - PS417_00520 0.20 +0.3 104,656 + PS417_00520 0.32 +0.1 104,657 - PS417_00520 0.32 +0.1 104,691 - PS417_00520 0.34 +0.7 104,742 + PS417_00520 0.38 +0.9 104,964 + PS417_00520 0.55 -0.1
Or see this region's nucleotide sequence