Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04430 and PS417_04435 are separated by 2 nucleotides PS417_04435 and PS417_04440 are separated by 164 nucleotides PS417_04440 and PS417_04445 are separated by 3 nucleotides PS417_04445 and PS417_04450 are separated by 35 nucleotides
PS417_04430: PS417_04430 - uracil transporter, at 984,521 to 985,795
_04430
PS417_04435: PS417_04435 - uracil phosphoribosyltransferase, at 985,798 to 986,436
_04435
PS417_04440: PS417_04440 - hypoxanthine-guanine phosphoribosyltransferase, at 986,601 to 987,158
_04440
PS417_04445: PS417_04445 - cupin, at 987,162 to 987,629
_04445
PS417_04450: PS417_04450 - hypothetical protein, at 987,665 to 988,150
_04450
Position (kb) 986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 985.862 kb on + strand, within PS417_04435 at 985.862 kb on + strand, within PS417_04435 at 985.862 kb on + strand, within PS417_04435 at 985.863 kb on - strand, within PS417_04435 at 985.901 kb on + strand, within PS417_04435 at 985.939 kb on + strand, within PS417_04435 at 985.940 kb on - strand, within PS417_04435 at 986.099 kb on + strand, within PS417_04435 at 986.099 kb on + strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.176 kb on + strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.233 kb on - strand, within PS417_04435 at 986.283 kb on - strand, within PS417_04435 at 986.315 kb on + strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.367 kb on + strand, within PS417_04435 at 986.368 kb on - strand, within PS417_04435 at 986.385 kb on + strand at 986.386 kb on - strand at 986.477 kb on + strand at 986.478 kb on - strand at 986.500 kb on + strand at 986.500 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.503 kb on - strand at 986.510 kb on + strand at 986.510 kb on + strand at 986.511 kb on - strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.555 kb on + strand at 986.555 kb on + strand at 986.655 kb on + strand at 986.814 kb on + strand, within PS417_04440 at 987.055 kb on - strand, within PS417_04440 at 987.055 kb on - strand, within PS417_04440 at 987.105 kb on + strand at 987.114 kb on + strand at 987.138 kb on + strand at 987.156 kb on + strand at 987.156 kb on + strand at 987.156 kb on + strand at 987.157 kb on - strand at 987.157 kb on - strand at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.597 kb on + strand at 987.632 kb on + strand at 987.679 kb on - strand at 987.818 kb on - strand, within PS417_04450 at 987.818 kb on - strand, within PS417_04450 at 987.818 kb on - strand, within PS417_04450 at 987.989 kb on + strand, within PS417_04450 at 987.990 kb on - strand, within PS417_04450 at 987.998 kb on - strand, within PS417_04450 at 988.038 kb on - strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.077 kb on - strand, within PS417_04450 at 988.077 kb on - strand, within PS417_04450 at 988.081 kb on - strand, within PS417_04450 at 988.095 kb on - strand, within PS417_04450 at 988.108 kb on + strand at 988.108 kb on + strand at 988.109 kb on - strand at 988.109 kb on - strand at 988.122 kb on + strand at 988.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 985,862 + PS417_04435 0.10 +2.4 985,862 + PS417_04435 0.10 +1.1 985,862 + PS417_04435 0.10 -1.3 985,863 - PS417_04435 0.10 -1.3 985,901 + PS417_04435 0.16 -0.8 985,939 + PS417_04435 0.22 -2.1 985,940 - PS417_04435 0.22 -0.2 986,099 + PS417_04435 0.47 -0.2 986,099 + PS417_04435 0.47 -1.2 986,100 - PS417_04435 0.47 -1.2 986,100 - PS417_04435 0.47 -0.4 986,100 - PS417_04435 0.47 -0.9 986,100 - PS417_04435 0.47 -0.5 986,176 + PS417_04435 0.59 -0.5 986,177 - PS417_04435 0.59 -1.6 986,177 - PS417_04435 0.59 -0.5 986,177 - PS417_04435 0.59 +0.6 986,233 - PS417_04435 0.68 -0.2 986,283 - PS417_04435 0.76 -0.8 986,315 + PS417_04435 0.81 -0.4 986,316 - PS417_04435 0.81 -2.2 986,316 - PS417_04435 0.81 -1.5 986,367 + PS417_04435 0.89 -0.3 986,368 - PS417_04435 0.89 +2.2 986,385 + -0.7 986,386 - -1.2 986,477 + -2.7 986,478 - +0.1 986,500 + -2.2 986,500 + -1.2 986,502 + -1.3 986,502 + -0.3 986,502 + -1.1 986,502 + +0.0 986,502 + -2.2 986,502 + -0.0 986,503 - +0.2 986,510 + -0.2 986,510 + -0.4 986,511 - -0.5 986,513 + -1.3 986,513 + -0.5 986,513 + -1.0 986,513 + -0.4 986,514 - +0.1 986,514 - +0.8 986,514 - +0.0 986,514 - +1.1 986,555 + -1.1 986,555 + -1.0 986,655 + +0.7 986,814 + PS417_04440 0.38 +1.6 987,055 - PS417_04440 0.81 +1.9 987,055 - PS417_04440 0.81 +4.3 987,105 + +2.9 987,114 + +0.6 987,138 + +0.4 987,156 + -0.5 987,156 + +0.3 987,156 + +0.7 987,157 - +1.6 987,157 - -0.7 987,303 + PS417_04445 0.30 -1.9 987,303 + PS417_04445 0.30 -0.1 987,303 + PS417_04445 0.30 -3.7 987,303 + PS417_04445 0.30 +0.1 987,304 - PS417_04445 0.30 +0.4 987,304 - PS417_04445 0.30 -0.4 987,304 - PS417_04445 0.30 +0.3 987,304 - PS417_04445 0.30 +0.3 987,597 + -2.1 987,632 + -0.1 987,679 - +0.3 987,818 - PS417_04450 0.31 +0.2 987,818 - PS417_04450 0.31 -0.8 987,818 - PS417_04450 0.31 -1.4 987,989 + PS417_04450 0.67 -0.5 987,990 - PS417_04450 0.67 -2.0 987,998 - PS417_04450 0.69 -0.6 988,038 - PS417_04450 0.77 +0.3 988,076 + PS417_04450 0.85 -0.2 988,076 + PS417_04450 0.85 +0.8 988,076 + PS417_04450 0.85 -0.1 988,076 + PS417_04450 0.85 -0.5 988,077 - PS417_04450 0.85 +0.8 988,077 - PS417_04450 0.85 +0.1 988,081 - PS417_04450 0.86 -0.1 988,095 - PS417_04450 0.88 -0.6 988,108 + +0.2 988,108 + +0.7 988,109 - +0.9 988,109 - +1.0 988,122 + -0.0 988,122 + +0.3
Or see this region's nucleotide sequence