Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04275 and PS417_04280 are separated by 48 nucleotides PS417_04280 and PS417_04285 are separated by 16 nucleotides
PS417_04275: PS417_04275 - hypothetical protein, at 956,859 to 960,674
_04275
PS417_04280: PS417_04280 - carbon-nitrogen hydrolase, at 960,723 to 961,571
_04280
PS417_04285: PS417_04285 - protease TldD, at 961,588 to 963,030
_04285
Position (kb) 960
961
962 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 959.766 kb on + strand, within PS417_04275 at 959.767 kb on - strand, within PS417_04275 at 959.767 kb on - strand, within PS417_04275 at 959.767 kb on - strand, within PS417_04275 at 960.036 kb on + strand, within PS417_04275 at 960.036 kb on + strand, within PS417_04275 at 960.159 kb on + strand, within PS417_04275 at 960.159 kb on + strand, within PS417_04275 at 960.160 kb on - strand, within PS417_04275 at 960.160 kb on - strand, within PS417_04275 at 960.160 kb on - strand, within PS417_04275 at 960.334 kb on - strand at 960.334 kb on - strand at 960.497 kb on + strand at 960.498 kb on - strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.607 kb on - strand at 960.607 kb on - strand at 960.607 kb on - strand at 960.607 kb on - strand at 960.607 kb on - strand at 960.687 kb on + strand at 960.687 kb on + strand at 960.687 kb on + strand at 960.687 kb on + strand at 960.688 kb on - strand at 960.833 kb on - strand, within PS417_04280 at 960.953 kb on - strand, within PS417_04280 at 960.953 kb on - strand, within PS417_04280 at 961.129 kb on - strand, within PS417_04280 at 961.195 kb on - strand, within PS417_04280 at 961.195 kb on - strand, within PS417_04280 at 961.339 kb on - strand, within PS417_04280 at 961.339 kb on - strand, within PS417_04280 at 961.390 kb on - strand, within PS417_04280 at 961.575 kb on + strand at 961.583 kb on + strand at 961.583 kb on + strand at 961.583 kb on + strand at 961.583 kb on + strand at 961.583 kb on + strand at 961.584 kb on - strand at 961.584 kb on - strand at 961.584 kb on - strand at 961.587 kb on + strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.709 kb on - strand at 961.709 kb on - strand at 961.831 kb on + strand, within PS417_04285 at 961.951 kb on + strand, within PS417_04285 at 961.952 kb on - strand, within PS417_04285 at 962.228 kb on - strand, within PS417_04285 at 962.422 kb on + strand, within PS417_04285
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 959,766 + PS417_04275 0.76 -3.6 959,767 - PS417_04275 0.76 -1.0 959,767 - PS417_04275 0.76 -2.3 959,767 - PS417_04275 0.76 -1.2 960,036 + PS417_04275 0.83 -2.2 960,036 + PS417_04275 0.83 -1.7 960,159 + PS417_04275 0.86 -4.5 960,159 + PS417_04275 0.86 -1.3 960,160 - PS417_04275 0.87 -1.6 960,160 - PS417_04275 0.87 -1.6 960,160 - PS417_04275 0.87 -2.6 960,334 - +1.2 960,334 - -2.5 960,497 + -2.0 960,498 - -2.6 960,606 + -2.6 960,606 + -2.6 960,606 + +0.9 960,606 + -1.6 960,606 + +0.9 960,606 + -2.3 960,607 - -3.5 960,607 - -0.4 960,607 - -4.0 960,607 - -2.0 960,607 - -2.7 960,687 + -2.9 960,687 + -0.9 960,687 + +0.0 960,687 + -0.6 960,688 - -0.7 960,833 - PS417_04280 0.13 -0.4 960,953 - PS417_04280 0.27 +1.0 960,953 - PS417_04280 0.27 +0.9 961,129 - PS417_04280 0.48 -0.9 961,195 - PS417_04280 0.56 +0.1 961,195 - PS417_04280 0.56 +0.7 961,339 - PS417_04280 0.73 +1.3 961,339 - PS417_04280 0.73 +1.0 961,390 - PS417_04280 0.79 +1.8 961,575 + +0.0 961,583 + +0.8 961,583 + +1.8 961,583 + +1.7 961,583 + +0.9 961,583 + +0.6 961,584 - +0.9 961,584 - +3.8 961,584 - +0.0 961,587 + +1.4 961,588 - +0.4 961,588 - -0.5 961,588 - +1.7 961,588 - +0.3 961,588 - +0.6 961,588 - +0.7 961,709 - -0.8 961,709 - +1.4 961,831 + PS417_04285 0.17 +1.3 961,951 + PS417_04285 0.25 +0.6 961,952 - PS417_04285 0.25 +1.4 962,228 - PS417_04285 0.44 +0.8 962,422 + PS417_04285 0.58 +0.9
Or see this region's nucleotide sequence