Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04005 and PS417_04010 are separated by 479 nucleotides PS417_04010 and PS417_04015 overlap by 4 nucleotides PS417_04015 and PS417_04020 are separated by 11 nucleotides
PS417_04005: PS417_04005 - ornithine decarboxylase, at 899,351 to 900,514
_04005
PS417_04010: PS417_04010 - glycine/betaine ABC transporter ATP-binding protein, at 900,994 to 902,151
_04010
PS417_04015: PS417_04015 - choline ABC transporter permease, at 902,148 to 902,801
_04015
PS417_04020: PS417_04020 - glycine/betaine ABC transporter substrate-binding protein, at 902,813 to 903,709
_04020
Position (kb) 900
901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.229 kb on + strand, within PS417_04005 at 900.230 kb on - strand, within PS417_04005 at 900.273 kb on + strand, within PS417_04005 at 900.274 kb on - strand, within PS417_04005 at 900.354 kb on + strand, within PS417_04005 at 900.355 kb on - strand, within PS417_04005 at 900.396 kb on + strand, within PS417_04005 at 900.397 kb on - strand, within PS417_04005 at 900.492 kb on + strand at 900.527 kb on + strand at 900.540 kb on + strand at 900.543 kb on + strand at 900.593 kb on + strand at 900.722 kb on - strand at 900.739 kb on - strand at 900.795 kb on + strand at 900.795 kb on + strand at 900.795 kb on + strand at 900.796 kb on - strand at 900.796 kb on - strand at 900.799 kb on + strand at 900.800 kb on - strand at 900.800 kb on - strand at 900.800 kb on - strand at 900.815 kb on - strand at 900.815 kb on - strand at 900.924 kb on + strand at 900.925 kb on - strand at 900.925 kb on - strand at 900.925 kb on - strand at 900.992 kb on + strand at 900.993 kb on - strand at 901.027 kb on - strand at 901.148 kb on + strand, within PS417_04010 at 901.148 kb on + strand, within PS417_04010 at 901.148 kb on + strand, within PS417_04010 at 901.149 kb on - strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.263 kb on - strand, within PS417_04010 at 901.301 kb on + strand, within PS417_04010 at 901.302 kb on - strand, within PS417_04010 at 901.420 kb on - strand, within PS417_04010 at 901.441 kb on - strand, within PS417_04010 at 902.080 kb on + strand at 902.080 kb on + strand at 902.081 kb on - strand at 902.081 kb on - strand at 902.081 kb on - strand at 902.285 kb on + strand, within PS417_04015 at 902.285 kb on + strand, within PS417_04015 at 902.285 kb on + strand, within PS417_04015 at 902.290 kb on - strand, within PS417_04015 at 902.485 kb on + strand, within PS417_04015 at 902.486 kb on - strand, within PS417_04015 at 902.486 kb on - strand, within PS417_04015 at 902.814 kb on + strand at 903.015 kb on + strand, within PS417_04020 at 903.015 kb on + strand, within PS417_04020 at 903.016 kb on - strand, within PS417_04020 at 903.075 kb on + strand, within PS417_04020 at 903.076 kb on - strand, within PS417_04020
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 900,096 + PS417_04005 0.64 +1.3 900,096 + PS417_04005 0.64 -0.5 900,096 + PS417_04005 0.64 +0.2 900,096 + PS417_04005 0.64 +1.5 900,096 + PS417_04005 0.64 -0.2 900,096 + PS417_04005 0.64 -0.9 900,097 - PS417_04005 0.64 +1.4 900,097 - PS417_04005 0.64 +0.2 900,097 - PS417_04005 0.64 -0.0 900,097 - PS417_04005 0.64 -1.3 900,097 - PS417_04005 0.64 -1.1 900,187 - PS417_04005 0.72 -0.7 900,187 - PS417_04005 0.72 +1.1 900,187 - PS417_04005 0.72 -1.0 900,229 + PS417_04005 0.75 +0.9 900,230 - PS417_04005 0.76 -2.1 900,273 + PS417_04005 0.79 -0.0 900,274 - PS417_04005 0.79 +0.1 900,354 + PS417_04005 0.86 +0.4 900,355 - PS417_04005 0.86 -0.6 900,396 + PS417_04005 0.90 +1.3 900,397 - PS417_04005 0.90 +1.0 900,492 + -0.2 900,527 + +1.2 900,540 + +0.1 900,543 + +2.2 900,593 + +0.7 900,722 - +1.3 900,739 - -2.2 900,795 + -1.0 900,795 + -0.3 900,795 + +1.5 900,796 - -0.7 900,796 - +8.1 900,799 + -2.2 900,800 - -0.9 900,800 - +1.0 900,800 - +0.5 900,815 - +1.2 900,815 - +0.2 900,924 + +0.3 900,925 - +0.6 900,925 - -0.8 900,925 - -0.8 900,992 + -0.1 900,993 - -3.3 901,027 - -0.8 901,148 + PS417_04010 0.13 -0.3 901,148 + PS417_04010 0.13 +0.7 901,148 + PS417_04010 0.13 -1.8 901,149 - PS417_04010 0.13 -0.5 901,262 + PS417_04010 0.23 -1.3 901,262 + PS417_04010 0.23 +0.0 901,262 + PS417_04010 0.23 -2.3 901,263 - PS417_04010 0.23 -1.9 901,301 + PS417_04010 0.27 +0.1 901,302 - PS417_04010 0.27 +0.8 901,420 - PS417_04010 0.37 -0.6 901,441 - PS417_04010 0.39 -1.5 902,080 + +0.7 902,080 + +1.0 902,081 - +0.9 902,081 - -0.8 902,081 - +0.3 902,285 + PS417_04015 0.21 +1.5 902,285 + PS417_04015 0.21 -0.2 902,285 + PS417_04015 0.21 -0.8 902,290 - PS417_04015 0.22 -0.2 902,485 + PS417_04015 0.52 +0.7 902,486 - PS417_04015 0.52 +0.1 902,486 - PS417_04015 0.52 +0.1 902,814 + +0.1 903,015 + PS417_04020 0.23 +0.5 903,015 + PS417_04020 0.23 -0.4 903,016 - PS417_04020 0.23 -1.0 903,075 + PS417_04020 0.29 +0.4 903,076 - PS417_04020 0.29 -0.8
Or see this region's nucleotide sequence