Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03830 and PS417_03835 are separated by 300 nucleotides PS417_03835 and PS417_03840 are separated by 10 nucleotides PS417_03840 and PS417_03845 are separated by 5 nucleotides PS417_03845 and PS417_03850 are separated by 94 nucleotides PS417_03850 and PS417_03855 are separated by 192 nucleotides PS417_03855 and PS417_03865 are separated by 288 nucleotides
PS417_03830: PS417_03830 - protein disaggregation chaperone, at 863,397 to 865,961
_03830
PS417_03835: PS417_03835 - tRNA-Asn, at 866,262 to 866,337
_03835
PS417_03840: PS417_03840 - tRNA-Pro, at 866,348 to 866,424
_03840
PS417_03845: PS417_03845 - tRNA-Lys, at 866,430 to 866,505
_03845
PS417_03850: PS417_03850 - tRNA-Pro, at 866,600 to 866,676
_03850
PS417_03855: PS417_03855 - NADH dehydrogenase, at 866,869 to 868,167
_03855
PS417_03865: PS417_03865 - hypothetical protein, at 868,456 to 869,085
_03865
Position (kb) 866
867
868
869 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 865.980 kb on + strand at 866.677 kb on + strand at 866.843 kb on - strand at 866.852 kb on + strand at 866.852 kb on + strand at 866.984 kb on + strand at 866.984 kb on + strand at 866.985 kb on - strand at 866.985 kb on - strand at 867.086 kb on + strand, within PS417_03855 at 867.086 kb on + strand, within PS417_03855 at 867.087 kb on - strand, within PS417_03855 at 867.095 kb on + strand, within PS417_03855 at 867.095 kb on + strand, within PS417_03855 at 867.095 kb on + strand, within PS417_03855 at 867.096 kb on - strand, within PS417_03855 at 867.101 kb on + strand, within PS417_03855 at 867.101 kb on + strand, within PS417_03855 at 867.102 kb on - strand, within PS417_03855 at 867.191 kb on - strand, within PS417_03855 at 867.362 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.975 kb on - strand, within PS417_03855 at 868.041 kb on + strand at 868.152 kb on + strand at 868.152 kb on + strand at 868.153 kb on - strand at 868.153 kb on - strand at 868.155 kb on + strand at 868.155 kb on + strand at 868.156 kb on - strand at 868.156 kb on - strand at 868.174 kb on - strand at 868.205 kb on + strand at 868.355 kb on + strand at 868.401 kb on + strand at 868.417 kb on + strand at 868.483 kb on + strand at 868.483 kb on + strand at 868.484 kb on - strand at 868.484 kb on - strand at 868.595 kb on + strand, within PS417_03865 at 868.700 kb on + strand, within PS417_03865 at 868.700 kb on + strand, within PS417_03865 at 868.701 kb on - strand, within PS417_03865 at 868.701 kb on - strand, within PS417_03865 at 868.704 kb on + strand, within PS417_03865 at 868.704 kb on + strand, within PS417_03865 at 869.069 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 865,980 + +0.9 866,677 + -0.3 866,843 - +0.2 866,852 + +0.2 866,852 + -0.1 866,984 + -2.3 866,984 + -0.0 866,985 - -0.4 866,985 - +0.8 867,086 + PS417_03855 0.17 -0.8 867,086 + PS417_03855 0.17 -1.0 867,087 - PS417_03855 0.17 -0.5 867,095 + PS417_03855 0.17 -1.7 867,095 + PS417_03855 0.17 -4.0 867,095 + PS417_03855 0.17 -0.3 867,096 - PS417_03855 0.17 -0.5 867,101 + PS417_03855 0.18 -2.5 867,101 + PS417_03855 0.18 +0.0 867,102 - PS417_03855 0.18 -1.1 867,191 - PS417_03855 0.25 +0.0 867,362 - PS417_03855 0.38 +1.4 867,512 - PS417_03855 0.49 -0.4 867,512 - PS417_03855 0.49 +1.3 867,512 - PS417_03855 0.49 +0.4 867,512 - PS417_03855 0.49 -0.5 867,975 - PS417_03855 0.85 -0.1 868,041 + +1.4 868,152 + +0.2 868,152 + -1.8 868,153 - -1.1 868,153 - +0.3 868,155 + +0.1 868,155 + -0.2 868,156 - -0.5 868,156 - -0.1 868,174 - -1.5 868,205 + -1.2 868,355 + +0.5 868,401 + -0.4 868,417 + -0.4 868,483 + +0.5 868,483 + -1.4 868,484 - +1.9 868,484 - +0.2 868,595 + PS417_03865 0.22 -1.6 868,700 + PS417_03865 0.39 -0.5 868,700 + PS417_03865 0.39 -1.1 868,701 - PS417_03865 0.39 -0.4 868,701 - PS417_03865 0.39 +1.2 868,704 + PS417_03865 0.39 -1.3 868,704 + PS417_03865 0.39 +0.2 869,069 + +0.5 869,085 + +0.7 869,085 + -0.8 869,085 + -0.8 869,085 + -0.1 869,145 + +1.2
Or see this region's nucleotide sequence