Strain Fitness in Pseudomonas simiae WCS417 around PS417_03805

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03795 and PS417_03800 are separated by 11 nucleotidesPS417_03800 and PS417_03805 are separated by 62 nucleotidesPS417_03805 and PS417_03810 overlap by 14 nucleotidesPS417_03810 and PS417_03815 are separated by 124 nucleotides PS417_03795: PS417_03795 - pilus assembly protein PilX, at 857,947 to 858,477 _03795 PS417_03800: PS417_03800 - pilus assembly protein, at 858,489 to 858,890 _03800 PS417_03805: PS417_03805 - D-amino acid oxidase, at 858,953 to 860,062 _03805 PS417_03810: PS417_03810 - hypothetical protein, at 860,049 to 860,282 _03810 PS417_03815: PS417_03815 - DNA transporter, at 860,407 to 861,432 _03815 Position (kb) 858 859 860 861Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 857.965 kb on - strandat 857.965 kb on - strandat 858.097 kb on - strand, within PS417_03795at 858.259 kb on - strand, within PS417_03795at 858.330 kb on - strand, within PS417_03795at 858.412 kb on + strandat 858.413 kb on - strandat 858.423 kb on - strand, within PS417_03795at 858.423 kb on - strand, within PS417_03795at 858.423 kb on - strand, within PS417_03795at 858.512 kb on + strandat 858.513 kb on - strandat 858.661 kb on - strand, within PS417_03800at 858.681 kb on - strandat 858.681 kb on - strand, within PS417_03800at 858.720 kb on - strand, within PS417_03800at 858.720 kb on - strand, within PS417_03800at 858.765 kb on - strand, within PS417_03800at 858.972 kb on + strandat 859.113 kb on - strand, within PS417_03805at 859.113 kb on - strand, within PS417_03805at 859.124 kb on + strand, within PS417_03805at 859.359 kb on - strand, within PS417_03805at 859.373 kb on + strand, within PS417_03805at 859.374 kb on - strand, within PS417_03805at 859.506 kb on + strand, within PS417_03805at 859.506 kb on + strand, within PS417_03805at 859.507 kb on - strand, within PS417_03805at 859.507 kb on - strand, within PS417_03805at 859.592 kb on - strand, within PS417_03805at 859.592 kb on - strand, within PS417_03805at 859.592 kb on - strand, within PS417_03805at 859.889 kb on + strand, within PS417_03805at 859.889 kb on + strand, within PS417_03805at 859.890 kb on - strand, within PS417_03805at 859.890 kb on - strand, within PS417_03805at 859.890 kb on - strand, within PS417_03805at 859.890 kb on - strand, within PS417_03805at 859.890 kb on - strand, within PS417_03805at 860.061 kb on - strandat 860.099 kb on - strand, within PS417_03810at 860.099 kb on - strand, within PS417_03810at 860.239 kb on - strandat 860.348 kb on + strandat 860.349 kb on - strandat 860.349 kb on - strandat 860.349 kb on - strandat 860.433 kb on - strandat 860.433 kb on - strandat 860.552 kb on + strand, within PS417_03815at 860.630 kb on + strand, within PS417_03815at 860.631 kb on - strand, within PS417_03815at 860.631 kb on - strand, within PS417_03815at 860.631 kb on - strand, within PS417_03815at 860.631 kb on - strand, within PS417_03815

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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857,965 - +0.8
857,965 - -0.5
858,097 - PS417_03795 0.28 +0.3
858,259 - PS417_03795 0.59 -0.7
858,330 - PS417_03795 0.72 -0.3
858,412 + +0.4
858,413 - +2.0
858,423 - PS417_03795 0.90 +0.1
858,423 - PS417_03795 0.90 +1.0
858,423 - PS417_03795 0.90 +0.4
858,512 + -1.0
858,513 - +0.4
858,661 - PS417_03800 0.43 -0.5
858,681 - -1.1
858,681 - PS417_03800 0.48 +1.3
858,720 - PS417_03800 0.57 -0.9
858,720 - PS417_03800 0.57 -0.2
858,765 - PS417_03800 0.69 +0.6
858,972 + -0.2
859,113 - PS417_03805 0.14 +0.2
859,113 - PS417_03805 0.14 +0.1
859,124 + PS417_03805 0.15 +0.5
859,359 - PS417_03805 0.37 +0.4
859,373 + PS417_03805 0.38 +0.7
859,374 - PS417_03805 0.38 -1.5
859,506 + PS417_03805 0.50 +0.5
859,506 + PS417_03805 0.50 -0.3
859,507 - PS417_03805 0.50 +0.7
859,507 - PS417_03805 0.50 +0.7
859,592 - PS417_03805 0.58 -0.7
859,592 - PS417_03805 0.58 +0.5
859,592 - PS417_03805 0.58 +0.2
859,889 + PS417_03805 0.84 +1.0
859,889 + PS417_03805 0.84 -0.3
859,890 - PS417_03805 0.84 -1.8
859,890 - PS417_03805 0.84 +0.7
859,890 - PS417_03805 0.84 +0.7
859,890 - PS417_03805 0.84 +0.4
859,890 - PS417_03805 0.84 +0.0
860,061 - -0.0
860,099 - PS417_03810 0.21 +2.1
860,099 - PS417_03810 0.21 -0.5
860,239 - +1.2
860,348 + -0.1
860,349 - +0.9
860,349 - -0.1
860,349 - -3.0
860,433 - -0.6
860,433 - -1.7
860,552 + PS417_03815 0.14 -0.3
860,630 + PS417_03815 0.22 +1.1
860,631 - PS417_03815 0.22 +0.0
860,631 - PS417_03815 0.22 +0.2
860,631 - PS417_03815 0.22 -2.0
860,631 - PS417_03815 0.22 +3.1

Or see this region's nucleotide sequence