Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03075 and PS417_03080 are separated by 10 nucleotides PS417_03080 and PS417_03085 are separated by 10 nucleotides PS417_03085 and PS417_03090 are separated by 1 nucleotides PS417_03090 and PS417_03095 are separated by 10 nucleotides
PS417_03075: PS417_03075 - hypothetical protein, at 707,321 to 707,593
_03075
PS417_03080: PS417_03080 - hypothetical protein, at 707,604 to 708,314
_03080
PS417_03085: PS417_03085 - type II secretion system protein F, at 708,325 to 709,212
_03085
PS417_03090: PS417_03090 - type II secretion system protein F, at 709,214 to 710,095
_03090
PS417_03095: PS417_03095 - ATPase, at 710,106 to 711,377
_03095
Position (kb) 708
709
710 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 707.326 kb on + strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.329 kb on + strand at 707.329 kb on + strand at 707.330 kb on - strand at 707.394 kb on + strand, within PS417_03075 at 707.394 kb on + strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.580 kb on + strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.605 kb on + strand at 707.767 kb on + strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.446 kb on + strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.649 kb on + strand, within PS417_03085 at 708.649 kb on + strand, within PS417_03085 at 708.833 kb on + strand, within PS417_03085 at 709.323 kb on + strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.348 kb on - strand, within PS417_03090 at 709.384 kb on - strand, within PS417_03090 at 709.549 kb on - strand, within PS417_03090 at 709.741 kb on + strand at 709.742 kb on - strand, within PS417_03090 at 709.776 kb on + strand, within PS417_03090 at 709.777 kb on - strand, within PS417_03090 at 710.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 707,326 + -0.3 707,326 + -0.8 707,326 + +0.3 707,327 - -0.1 707,327 - -0.8 707,327 - +0.1 707,329 + -0.6 707,329 + -1.0 707,330 - -0.2 707,394 + PS417_03075 0.27 +0.3 707,394 + PS417_03075 0.27 -1.1 707,395 - PS417_03075 0.27 -0.7 707,395 - PS417_03075 0.27 +1.8 707,580 + +0.6 707,581 - -0.0 707,581 - +5.9 707,581 - +0.2 707,605 + +1.5 707,767 + PS417_03080 0.23 +1.2 708,038 - PS417_03080 0.61 +0.1 708,038 - PS417_03080 0.61 +0.2 708,446 + PS417_03085 0.14 -2.1 708,447 - PS417_03085 0.14 -0.1 708,447 - PS417_03085 0.14 -1.7 708,447 - PS417_03085 0.14 -0.1 708,447 - PS417_03085 0.14 -1.2 708,649 + PS417_03085 0.36 +0.1 708,649 + PS417_03085 0.36 -0.2 708,833 + PS417_03085 0.57 -0.8 709,323 + PS417_03090 0.12 -0.3 709,324 - PS417_03090 0.12 -0.8 709,324 - PS417_03090 0.12 +0.9 709,324 - PS417_03090 0.12 -0.5 709,348 - PS417_03090 0.15 -0.1 709,384 - PS417_03090 0.19 -0.3 709,549 - PS417_03090 0.38 +0.0 709,741 + -0.1 709,742 - PS417_03090 0.60 -0.0 709,776 + PS417_03090 0.64 -0.1 709,777 - PS417_03090 0.64 -0.3 710,208 - -0.3
Or see this region's nucleotide sequence